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54-2902-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26443176 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron6 (CDS)
    Flanking Genome Sequence: 54-2902-1 - 5-prime edge 
    GCTATAACAT TAAGGAGGCG GTTAATGATT TCGTCAATGC TTCTCTTGTT 
    TATGTAAGTC TTGAGTAGTA TTTTTTTTTT TTCAANGGGG GGGGGAAANN 
    TGGNNTAANT NNNAAANGAA NCNANGGGGN CNNNNGNCAA NGGGAANCCN 
    GGGAACCCNN NNAANGGGNN NANGGGNCAA AANTTTNAAN NCCCATTCCC 
    CCAANTTTGG NTNAAAANAA AGGGCCAANC TNNCCCTTTT NNTAANNAGG 
    GTTTNAANNN CTTTGNCTGG NGGNAATGGC CAAANANAAA NCCCCNNGNT 
    TTGGNAANCA AANTNNNANN NCCNAAAANT CCCTTNNANN NGNAGGNCCG 
    GGNAACCCCN TNNNCCCCNN NCCNNTNTTT TTTTNTNANN CCNAAAANNN 
    TNCCNANNNT NCNTGGCCCN NNAAAAACNA ANAATTTTTC CCCGGNNGGC 
    CCTTAANNCC NGCCCCNAAA AAANTTANNN NNTCCNTTTG GTNAANCNCC 
    TGNATTTNCC AAAAAGCAAA AANTTCCCCC NNNNTTTTNN NAAATTTCNG 
    NNTGGGCNNT NCCCTNNNGG AATGGGTNAT TTANCNANCC GNCTNGTTTT 
    AAAAAAAATT TTNGGGCCTT TAACGGGATC CTACTGGGNT NAAACCGGNT 
    TTTACCGGGG CCCAATTCCC ANTTTTTTAA GGAAAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26443292 [Map]; Strand: c
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 54-2902-1 - 3-prime edge 
    GTTATAGCCA TCGAAACGAG GGTTGTCCTG CAAAATGACG AGTGAATCGA 
    ATT

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR