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Mutant Lines
54-3105-1

54-3105-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 1037438 [Map]; Strand: c
- AT1G04020.1 - [+] show detail - breast cancer associated RING 1
  Distance: 0; Region: exon4 (CDS)
- AT1G04020.2 - [+] show detail - breast cancer associated RING 1
  Distance: 0; Region: exon4 (CDS)

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCGCT GATTGGCAGC ATCATTCTCT GATTCAAACT 
CATATAATAG GAGATGATCA CTCAACTGCT TTTCAGTCCA ATCCTGATGC 
TTAGGTCTTG GATCACTTTC TTCTGAGGTC GGAAGAGGAG AACCATCACG 
ACTAGAAGAA TCAGTACCAC CACTGCGCTT GCTCACATCC TTGTCAGTCA 
TCTCAGAATC TTCAGATTCG CCATGTTTAG GGCTGTTGGA ATTGTTCAAT 
GCATCGTTCT TGTAGTTGCA ATCATTTGGA ATCTGTAATT GTGGGAGATG 
AACACTAACA GCTGCATTCA AGCTCTTGTA TATGCTTATA ACACTCTCCA 
TGAATCGAAG ATCTCTCCTA GCTGCACATG AGAGTAATTC ACAATTTCAC 
ATACTGTCTT GAACACTAAT CTTCAAATGA TATCACTGGA CTTACCCTTT 
TTGGGATGTT TAGATTTGCA GACAGGACAT CCCGATTCAA CTTGCGACGA 
TTTGTGTACA CATGAACTGT ACAAATAATT TCCAGAAAGA TAAGAATCTA 
TATGAATT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 1037483 [Map]; Strand: c
  - AT1G04020.1 - [+] show detail - breast cancer associated RING 1
    Distance: 0; Region: intron4 (CDS)
  - AT1G04020.2 - [+] show detail - breast cancer associated RING 1
    Distance: 0; Region: intron4 (CDS)
Flanking Genome Sequence: 54-3105-1 - 3-prime edge
```
CTGCCAATCA CGTAAGAGCA TATTACTGAT CATTTTGATT TATCAGTGCG 
CAATATTGAA AGATGTTTAT AAATTCCTCT TTTTTTTCTT CTTGCTGCAG 
ACTCCGGAAA GTTATACAGA ACAAGCTGCA AAAAATGTGA GGGACATCAC 
TGCTTCTGAG CAGCCTAGCA ATGCTGCAAG GAAGCGGATA TGTGGTGATT 
CCTTTATCCA GGAAAGCAGT CCGAATCCTA AGACTCAGGA TC
```

AT1G04020.1

Model type: Protein coding
Short Description: breast cancer associated RING 1
Curator Summary: Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description: breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 5889 Blast hits to 5527 proteins in 313 species: Archae - 0; Bacteria - 10; Metazoa - 4435; Fungi - 374; Plants - 570; Viruses - 11; Other Eukaryotes - 489 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G04020.2

Model type: Protein coding
Short Description: breast cancer associated RING 1
Curator Summary: Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein
Computational Description: breast cancer associated RING 1 (BARD1); FUNCTIONS IN: transcription coactivator activity, DNA binding; INVOLVED IN: DNA repair, regulation of meristem structural organization, leaf development; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: breast cancer susceptibility1 (TAIR:AT4G21070.1); Has 6045 Blast hits to 5706 proteins in 320 species: Archae - 0; Bacteria - 47; Metazoa - 4577; Fungi - 362; Plants - 542; Viruses - 11; Other Eukaryotes - 506 (source: NCBI BLink).
Link: InterPro Scan - TAIR