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Mutant Lines
54-3106-1

54-3106-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 25792481 [Map]; Strand: w
- AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
  Distance: 2117; Region: intergenic
- AT5G64530.1 - [+] show detail - xylem NAC domain 1
  Distance: -2752; Region: intergenic

CTTTTCGGAT CACTATATAC TCACTCACTC ACTCACTCAC GTTGGCTTTC 
TAGCTTTCAA TATGTTTTTA GTGGATTAGT ATAAATGCAA GCAATAACTA 
AATATAAACA TCTATTATTT AATAAGTCTA ATGAAAATGA AAAATACTAT 
AGTCTATATA CTTAGTTAAT GAGGACAAAA CTAAAGAAGA CAAAGATCTT 
TCGATCACGC GTGTTGGCGT GGGCATGTGC CTGCGTAAGC GTAAGCAATA 
GATCATCCAA ATGTGACTTA CGTGTTTTGA CCATTTTGCC CTAGAGAATA 
ATATTATCAA AGAAATTTGA TGTTCACAAT TTGTTGTTAT ACAACAGAAT 
TTCTTAATTT TAAAAACATT GGAGAAATCT GAAGCAAAGT TTGAGGAGCA 
CCCACACACT CCTCCTATTC ATTGGGGCTG CCTACTCCTA TGCTCTTCTT 
CTTCTTTTTT TAATTGATCT GATGAATTGC TTATTAAGTT TTTAAAATTT 
GAGAACAGTG AAAAAACACA ATAGTAATAG CAATACTGTA TATAACAAGT 
CAATTATTTT AAGCAAGCAA GTGAAAACAA TAATAGTAAA ATAGCAATAA 
GAAGTCAATT AATTGAAGCA AATAATACTA GAGACCAATT ATTTTAAGAG 
AGGAAGTGGG TCCAGAGGAG AAAAATCTAT AGTTGAACTC TGAATCTATG 
GGGAG

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 25792365 [Map]; Strand: w
  - AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
    Distance: 2001; Region: intergenic
  - AT5G64530.1 - [+] show detail - xylem NAC domain 1
    Distance: -2868; Region: intergenic
Flanking Genome Sequence: 54-3106-1 - 3-prime edge
```
CCGAAAAGTA CATCCAACAT ACAACGGAGT GAATTAAACT TGATACATAT 
TGGACGATCA AAAAATAATT TTGAAAGTAA TTTACTATTT CAGTTAGCAA 
AAACTTAAAT TTTGTTAGAT TGAGAAGAAA AATTAAAACA ATGAATT
```

AT5G64520.2

Model type: Protein coding
Short Description: homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary: Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description: homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 215 Blast hits to 213 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G64530.1

Model type: Protein coding
Short Description: xylem NAC domain 1
Computational Description: xylem NAC domain 1 (XND1); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 25 (TAIR:AT1G61110.1); Has 2741 Blast hits to 2738 proteins in 73 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2741; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR