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54-3120-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24035135 [Map]; Strand: c
      • AT5G59660.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -552; Region: promoter
    Flanking Genome Sequence: 54-3120-1 - 5-prime edge 
    CCGACATGGC ACACCAAGAG TCAATCAACA CACATTCAAA ATATCACCAA 
    AGAAAACAGA GGAATATGAT TTCTTCACAC GTTACTTGCA GCAGCTCAAA 
    CTATCTCGCC ATAGGAAACA TACCAGTGTC AAAGATGATG TTCACTTCAG 
    CGGAACTCTG AGATTCCATG CCTCTACTCA TATTCCTCCT CGAGTTTTCA 
    GACACAAGAC ACTCTTTTAG TTCGATAACA ACCTGGGACA TACTTGGTCG 
    TCTTGTGGAA GAAGGATTTG CACATGACAT TGCTAGTTCA AGAGCTCTCC 
    ATGCAGACCG AGAATCGTAA TCTCCATGAA GGTTTGGGTC CATGATACTA 
    CTAATATCTC CACTATTTAG CTCAAACCCA ACCCATTCTG TTATGTGAGT 
    CTTTGCACGG GCCTGGTCGA TCACGGGTTC GTTTGTGATC ATCTCCAATA 
    ACACAATACC AAAGCTGTAC ACATCGCTCT TCTCGGTTAA CCGACTTGTA 
    CGGTAATATC TGCAAGGCAA TGTATTCTTC AACATTTAAA GGATAATAAA 
    AGTTTTTTCC AGCACATTTT GATGTTAACT AACAATACTT ACTCGGGATC 
    AAGGTATCCA GGGGTACCAA CAATACCGNT GAAACATGAG AATCCCCTNC 
    ATCAGGGAAA GACCTTGAGA GTCCAAAATC AGCGAGCTTG GCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24030445 [Map]; Strand: c
      • AT5G59640.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
      • AT5G59650.1 - [+] show detail - Leucine-rich repeat protein kinase family protein
        Distance: -901; Region: promoter
    Flanking Genome Sequence: 54-3120-1 - 3-prime edge 
    CATGTCGGGA ATGTTTATGG ATCCAAATTC TTTTTTCTTT AATGGGCCGA 
    TAAAACCCAA AGTTTGGCCC ATAACAATTC TTTCTGTTAT TNTAGCAACG 
    TTGAAAAATT ACATACCAGT NGCGTTNAAA ACGCGCCTCT CCTGCNACTG 
    NGTNTCCAGC NCTCCAAATC GTCAATCGCG NAAGCNAATC AGNGCTAATN 
    TCGNTGGNNA AGATGGCCGA GTNATCGCCG GACATTCCNC TCCNGNNGTC 
    NGNGAGGAGA CNNANNATNA NCTCACACCC CTGGCCGGAA GGTCAAAATA 
    ANAGCCTGAC ATGGNACANN CGNCTGAAGA NCNAGAGGAA AANTGANNNG 
    GTNAATGATN GGCGGGAAGA GGAATCTTCC ATGATNAAAA ANGNTGNTAA 
    NCNNGGNCGA AAAATGNGGG CCCCNCTCCC GGNGNAGNAG GGGTTTTNAA 
    NAGCCCCNTA AAAANNTGTN GNCAAAANTA AAAANCANGG GCCTTTTTGG 
    NAAAAACANC CCNCGNCNGG GCCAAAANAA AAANAGNGGG NCCNNTNTTT 
    NANGNGGNNA TNAANCNNNC GNAAANGGGN NNNAANAAAA GCNNNCCNCC 
    TGNGNAAAAA AAAACNCCCT GGGGNGAACN ANNTTTTTTG GNGNTTTTAA 
    ANAAANCTNT TNNCGGTGCC TTNAAAAAAA NGGTTNGTNN GNGGNAGGTT 
    TTTTTNANAA AAANCAAGNG GGGGTCNTTT TTGGGNGGGG AGNAANAAAA 
    NCCCCCCGCG NC

AT5G59640.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
CACTA-like transposase family (En/Spm), has a 5.1e-159 P-value blast match to GB:AAD55677 putative transposase protein (CACTA-element) transposon="Shooter" (Zea mays)
Link
InterPro Scan - TAIR

AT5G59650.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59680.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59660.1

Model type
Protein coding
Short Description
Leucine-rich repeat protein kinase family protein
Computational Description
Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT5G59670.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR