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54-3155-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2556345 [Map]; Strand: w
      • AT1G08150.1 - [+] show detail - Cation/hydrogen exchanger family protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-3155-1 - 5-prime edge 
    GNGNAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATATAT CATCTACAAG CTACATTCTG TTGTTGTTGC 
    ACCACCAACA CCGACCCTCT ACGGGGAAAA TCTTGAGACA CCAACAGATC 
    TCCAATCACA CCTAACTCAT CAAACTCCGT CCACTCACTC AATGCACTCA 
    CCACGTCGGT CCCTACTCCG GCGCTCCTCC CCACCACGAA TAAATCAAAA 
    GAATTAGCAA TCGAGAGAAG GAGTGTTGAT GTGTCGGAAC CGTCGTTAAC 
    TGTCTCCTCT ACGTATTCCA CAAAACTATG TTGTCCAACA GTATTGTTAT 
    TGTTCCTCAG AACCTCCTTA ACCTCTGCCG AGTCCAGCAT CTGATCCCAC 
    CCTGTAGTCA TCCCATCCAT TTTCGCTGGG ATTAGCTTCA ACACTGTCAG 
    GTTCACATTC GGATTCCTCA TCATTTGCCT TCCCAATGCC AAGGCTTCTC 
    TGTCGTCTTT CCCGCCCACG AAAATTGCGC AGACCTGGTT TTAGACAAAT 
    CAAGTTTCAC ACGTAAACAC AAATTCAAGC ACGGAAACTA ATGATTAGCG 
    TATGGAACAA TCAAACCTTC AAATATGTGT TACCTCATAA GACGGACTGC 
    TCTTTTGCGC AGATAAAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4312281 [Map]; Strand: c
      • AT1G12665.1 - [+] show detail - LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: ...
        Distance: -50; Region: promoter
    Flanking Genome Sequence: 54-3155-1 - 3-prime edge 
    ACACAAAAGT TATAGCTTAA TATCTTATTG ATTGTGAATA TGTTAACTAA 
    TATAGAAATT TGCATTATCC CTATATAAAC AAGCCATGTT AACACAACCA 
    ACTTCACAAT TAACAAACAA TTACATCTAC AAATATAAAA TCTTTGCTTC 
    TTTCTCCCTG AAAAAAAGAA TGGAGGGTAA AAGCCTAGTT GCGATTTTGG 
    TGACAATACT GGTGATGGGA AACCTTCTTC CTCAAACAGA GGCTCAAAAG 
    ATCCCTTTTA TGCAATGTTT TCCAGCTTGT ATGATAGTGT GTAAGAGTGA 
    GTCAAAGTTT CCAAAGTTTC TTACTTGTCC AATAACATGT CTCAAAACAT 
    GTCTTCATCC TCCGTCTCTG CCTCCGTCTC CTCCTCCTTC TCCTTCTCCT 
    TCTCCTTCTC CTTCTCCTTG TGAGAACAAT TGAAAATCCA AGTAAGTTTT 
    CACTTTTCGT GTATATATAT GTAAATTTGA CATTTAATCA AGTGTTGTCT 
    TTGTGGTTTT TGTTGTGTTG TGGACAGATG TGGAGAAAGC CGCAGCCTGT 
    GTTGATATAT GTACGAACAA GTGTTTCAAC AAGAACTAGC GACATTTTTT 
    TTTTTTTTTN NAANGNNNNN NTNNNAANCC CNTTTTGCCC CCNNNNNTTN 
    NNANNAANGN CCCTTNNAAA TAAAAAANNN NTNNCNNNCN TTTTTTTTGG 
    ATNTTTTNGN

AT1G08150.1

Model type
Protein coding
Short Description
Cation/hydrogen exchanger family protein
Curator Summary
member of Putative Na+/H+ antiporter family
Computational Description
ATCHX5; FUNCTIONS IN: monovalent cation:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: cation transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cation/H+ exchanger (InterPro:IPR006153); BEST Arabidopsis thaliana protein match is: cation/H+ exchanger 6A (TAIR:AT1G08140.1); Has 2700 Blast hits to 2678 proteins in 819 species: Archae - 128; Bacteria - 1881; Metazoa - 0; Fungi - 113; Plants - 529; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G12665.1

Model type
Protein coding
Curator Summary
Encodes a Plant thionin family protein
Computational Description
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 1554 Blast hits to 382 proteins in 88 species: Archae - 6; Bacteria - 293; Metazoa - 49; Fungi - 201; Plants - 321; Viruses - 145; Other Eukaryotes - 539 (source: NCBI BLink).
Link
InterPro Scan - TAIR