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54-3206-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26367707 [Map]; Strand: w
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -1709; Region: intergenic
      • AT5G65925.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1338; Region: intergenic
    Flanking Genome Sequence: 54-3206-1 - 5-prime edge 
    CTAGTGACCA TGACTACAGG CTGGTTAGGG TTGTTCTAAA TATTGTTTGA 
    TGAACAGAAC ACATATCAGG ACATTTATAT AATTGTTGTG CCTAGAGTTG 
    CCCTGCATAA TTTTCAATTT GCTAAATTTG TTTGATTATT TAACTTAGAA 
    ATGAGTTATT GAGATTGTCG TATTTGAATA ATTACATCAC ATTGCGCTTT 
    GTATTTTGTT TCTAAGCTAC ATAGACTGTC ACGTGAGTCC TAAACTCGTA 
    GATTATTTAA CATGTTGTTT CGCTATTTTT AGGTTAGTGA TACAAATTAT 
    GATTAATTTT TCAGCAGATC ATAATTTAAC TTGATGAATT GATTTATTTT 
    TCGGGATATA TTCGTTTGCG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26367591 [Map]; Strand: w
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: -1593; Region: intergenic
      • AT5G65925.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: -1454; Region: intergenic
    Flanking Genome Sequence: 54-3206-1 - 3-prime edge 
    GTCACTAGGT CCCTTCTCTA GCACATACAA ACAGCCATTT ATTAGTTAAA 
    AATACTAATT GTATTATCGT CACAATCAAT ATGAAATTTC ACATGGTTTT 
    AGTCGTTATT ACAAACACGT CACATCGACT TAAAACTCTT GCCGGTCCGC 
    TTTAAGTTTA CTAGTTTGAC CGGGAAACTC ATAACATCGA CAACATTGAG 
    ATCATTCATT GGCAATGAAT T

AT5G65920.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G49810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65925.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49820.1); Has 45 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR