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54-3260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25788047 [Map]; Strand: c
      • AT5G64520.3 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 0; Region: exon1 (5UTR)
      • AT5G64520.1 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -22; Region: promoter
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -22; Region: promoter
    Flanking Genome Sequence: 54-3260-1 - 5-prime edge 
    CNTNNAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCC CGGTGTCACT CTTCCGACGT GAAAGTCTCG 
    GCGACTAGCC GGAGATAATG GTGAATTAAA TATGGGCTTA CAAGAGGAAT 
    GCCTTACTAA TGGGCCTTAA CTAAGTTATA ATTTAGGCCC AATATTATAT 
    ATTAAATGTG GGCTTGCAAA TTTCCCTTCG TTTTATTTAA ACAAAAATTT 
    AAAAATTTAA CACTTATCCA AAAAAAAACT TTAATGTAAT ACAAAAAATA 
    TAAGTTTAAA AACATTTTTT AATAAAAGAA AAAACAAGTG TTAAAAATCT 
    AAATTAAATG TAAACCATAT TGAACCTAAA ACACCTCTTA GGGGTTTGGA 
    TGATGTATCC AATTAGTTTA CACCAAATTT AAAAATTTAA CACTTGTCCA 
    AAAAAAACTT TAAAGTTTTA ATAGTAATAT AAAACTATAA GTTTGGANAT 
    ATTTTTGAAT AAAAGAAAAA TAAATGTTAA AAATTTGTAT AATCCTCAAA 
    GAAATAGTTT GAATAGTAAA AAAGTTTTAG TTAAAATATA AAAAAGAAAG 
    AATACTTAAA ATGAAAATTA AGATGAGATA GAAATTGACC TGACTAATAA 
    ATTGGATGGA CTTTGATGGG TTTTGCAGTT CTTTATGGGC TGAATTTTCT 
    TTTCTTATTG TTGGGCTCCG TAGGGTTATT AANATTGCAA TCCAACCGTT 
    AGTTTCTCCA CCACCGTGAC TGAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25788053 [Map]; Strand: c
      • AT5G64520.3 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: 0; Region: exon1 (5UTR)
      • AT5G64520.1 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -16; Region: promoter
      • AT5G64520.2 - [+] show detail - homolog of X-ray repair cross complementing 2 (XRCC2)
        Distance: -16; Region: promoter
    Flanking Genome Sequence: 54-3260-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGGG 
    GCTAGCGCGT GACGAGCGAT GGGAGATGAC GAAGCGCGTA GTTGGATTCG 
    CGGAGACGAG ACGGCGAAGC AGATGTTATC AAGGGTTCTT AAGGACCGTG 
    CGTTCCTGCT TATTCCGCCA CTTCACCGTG TACCTTTACG CGCCGGGAAC 
    GTAGTCGAGA TCACCGGCGC ATCTACGTCA GCGAAAACTC AAATCCTGAT 
    TCAAGCTGCG ATCAGTTGCA TTCTTCCTAA AACGTGGAAC GGCATTCACT 
    ATGGAGGATT AGGGAAACTG GTTTTGTTTC TCGATTTGGA TTGTCGCTTT 
    GATGTTCTCC GGTTATCTCA AATGCTAAAG CATCGTCTTC TTCAAGCTAA 
    CTGTATGCAA CTTTTGAATT TTCCCCTTCT TCTTAGCTTG CTTTGGATTT 
    TGCAGTCAGT TTCAAATTTA TGAAATTGAG ATAATCTCAA TCATACATAG 
    GCTTCGATAT TGAGATGTTC AAATGTTAGT TCTTTTAGCG TATCAGGGTT 
    AGGAAATGGA GCATGGTGGC AACTTGAGGA GTCAAATGTT AAGAGTTGCA 
    AATCTGCAGA AGAGAAGACA AAGACTGTGT TTGATGAGGA GTTATATGCT 
    TCATGCATGA AAAGGTTTCT GTATGTTCGT TGCTATGATA GTCTTGAACT 
    ATTGTCCAGT CTCAAGGTAA TGTTTTGAGT TGATGTATCT CACATTGTTG 
    GATTTGTGTT TGGATTCTAG GACCCT

AT5G64520.1

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 216 Blast hits to 214 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 116; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64520.2

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 215 Blast hits to 213 proteins in 83 species: Archae - 0; Bacteria - 0; Metazoa - 115; Fungi - 49; Plants - 37; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G64520.3

Model type
Protein coding
Short Description
homolog of X-ray repair cross complementing 2 (XRCC2)
Curator Summary
Encodes a protein of the XRCC2 family involved in DNA repair. atxrcc2-1 Mutants are sensitive to MitomycinC but do not show fertility defects.
Computational Description
homolog of X-ray repair cross complementing 2 (XRCC2) (XRCC2); Has 186 Blast hits to 186 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 44; Plants - 31; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Link
InterPro Scan - TAIR