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54-3262-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5874 [Map]; Strand: c
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: 0; Region: exon3 (CDS)
      • AT3G01030.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -783; Region: promoter
    Flanking Genome Sequence: 54-3262-1 - 5-prime edge 
    CNTTTNNAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CCTGGCAGCA GCAGCATTAG TCTTTGCTTG 
    CTTCTCCTTG TAGTCTCTGA CCGCGGACTT GATAGCGTCC TCTGCAAGCA 
    TACTGCAATG TAGCTTTACC GGTGGCAACC TAAGATGCTT AGCGATTTCC 
    CTGCAAATTT AAGAATCCCA AAACAATGAC TCATTCATCA AAATGTTAAC 
    CATATCACTA GATTTGGGAT ATTCCAAGCA CTAGAACAGA GTTAGAGATA 
    ACAATCCTGA CGATATATCT AAGAGACATG ATTTTGATGG TTAAAAGGCA 
    CTTACGCGTT CTTGATGGTC ATAACTTCGT CTAAGGTTTT GCCCTTGATC 
    CATTCAGAAG CTGAACCAAA CAAATATACA AATTATAACC TGTCTACATC 
    TACCTGACTC TGATCATGAG CCTCTTAACG AATCGATCAA AATTGAAAAC 
    CCTGATTCGA AGGCATACCA ACGGAAGATG AGGCGATAGC GGAGCCACAG 
    CCAAAGGTCT TGAATCGAGT ATCAATGATC TGACCTGAAT CATCGACCTT 
    AATCTGGAGG CTCATGAGGT CTCCGCAGGC AGGAGCTCCT ACCAATCCCG 
    TGCCAACGTT AGGGTCATTC CTGTTGAAGG AGCCAACGTT TCTAGGGTTT 
    TCAAAGTGGT CGATTACATT CTCGTGGTAT AATCGACGAC CTAACCCTAG 
    AGGAGACGCC TGTAACCCTA GGTAAGCCTT TT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 5858 [Map]; Strand: c
      • AT3G01020.1 - [+] show detail - ISCU-like 2
        Distance: 0; Region: exon3 (CDS)
      • AT3G01030.1 - [+] show detail - C2H2 and C2HC zinc fingers superfamily protein
        Distance: -799; Region: promoter
    Flanking Genome Sequence: 54-3262-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    AGAAGTGCGC TGCTGCAGAA GAAACCGTCA AGGCCTGATG ATTCCACTTA 
    TACCGCATTG TGCTGCTGCT GATGATGAAT TACACAAACT TACAAAGAGA 
    GGTGNGTTTG GTTGNTTTAG TTTTTCTCTT CTTTTCAAAT GTTTATTTAA 
    GTGCTTTGAA TAAAAATAGC TGAGCATGTG ACCCANATCC CAAGTTTTTT 
    CTGCATTGNG ATGATTCCTC TTCAATGTCT TATGGAATAA TTNGNTGCTG 
    TGATATNTGA TAATNNNGAT CATTTGATGT TAGACATAGC TGTGAGATTA 
    TAATGACACA AGCTACCANC CCGGCNCGTC NACCACGCTG CCCCCTATAG 
    NTTTGNGTNT TNTAACAAGG ATACANTNCT TACGCCTTTA ANATCCGGNT 
    GCCGNTTAAG TNCTTATACT CANTCNTACA CATGACATCA AGTCATATTC 
    NACTCCNAAA CACTANCCAA CCTTNTTNTT GCTTNTNAAA GCTACCANCC 
    CGGNCCGNNN ACCACNCNTG NNNNT

AT3G01020.1

Model type
Protein coding
Short Description
ISCU-like 2
Curator Summary
Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein.
Computational Description
ISCU-like 2 (ISU2); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, N-terminal (InterPro:IPR002871), ISC system FeS cluster assembly, IscU scaffold (InterPro:IPR011339); BEST Arabidopsis thaliana protein match is: SufE/NifU family protein (TAIR:AT4G22220.1); Has 5480 Blast hits to 5480 proteins in 1991 species: Archae - 108; Bacteria - 3649; Metazoa - 148; Fungi - 153; Plants - 89; Viruses - 0; Other Eukaryotes - 1333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G01030.1

Model type
Protein coding
Short Description
C2H2 and C2HC zinc fingers superfamily protein
Computational Description
C2H2 and C2HC zinc fingers superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2-type zinc finger family protein (TAIR:AT5G15480.1); Has 99 Blast hits to 95 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR