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54-3263-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14361626 [Map]; Strand: w
      • AT4G29130.1 - [+] show detail - hexokinase 1
        Distance: -6523; Region: intergenic
      • AT4G29140.1 - [+] show detail - MATE efflux family protein
        Distance: -7293; Region: intergenic
    Flanking Genome Sequence: 54-3263-1 - 5-prime edge
    GATTATTGGT ACCATTGGTT TTAACGTTCT TTTTTCGTTA CAAATAAGTA 
    ACTAAAACAT CGGAGTTTTT GATAAACGCG ATCATTCATC TGGCAGGTTG
    GAATATCCTC TGGAGCCTCA GCTGCGGCTG CNGTTAAAGG TTGCAAAGCG
    GCCTGAAAAC GTAGGGAAAC TCATTGTGGT AAGCTTAATT TATGTACTCC
    TATAAACCAT ATTTAAAATC TTGTGAGCAG TGATGTTCCA TCTGCACCAT
    GTTTTGTAAA GTGGGGAATA AGATAGGTAT ATGGTTTTGA GATGTGTTAT
    ATTTTAAGTT ATCTACGAAA GACTATAAGT GTCTAAAAAT GGAATAATGG
    GCACATACAT AAGTTGTGGC GATCGAAAAG GATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10788580 [Map]; Strand: c
      • AT2G25320.1 - [+] show detail - TRAF-like family protein
        Distance: -515; Region: promoter
    Flanking Genome Sequence: 54-3263-1 - 3-prime edge
    TTCGTGTGTG TGTTGTGCAC CGGCTCCACG AGGTGCTTGC TGCCCATGTC 
    GATGCCCCAA AAATCCCTAA AAGCTACCAN CCCGNNCCGT NGACCACGCG
    TNGCCCTATA TATGGATGTA TNGNTGTNAT AAAGCTAANG AATTGTAATA
    AACAATTTNG TAAATCATGG GTTTAACTAA ATTGGATAAA TNAATAAATN
    TTTTAAATGT CAATTCTAAA CTTTAANCT

AT2G25320.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT2G25330.1); Has 73652 Blast hits to 40883 proteins in 2342 species: Archae - 900; Bacteria - 9328; Metazoa - 35691; Fungi - 5783; Plants - 4303; Viruses - 204; Other Eukaryotes - 17443 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29130.1

Model type
Protein coding
Short Description
hexokinase 1
Curator Summary
Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment.
Computational Description
hexokinase 1 (HXK1); FUNCTIONS IN: fructokinase activity, hexokinase activity, glucokinase activity, zinc ion binding, ATP binding; INVOLVED IN: sugar mediated signaling pathway, hexose catabolic process, glucose mediated signaling pathway, programmed cell death; LOCATED IN: in 6 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Hexokinase, N-terminal (InterPro:IPR022672), Hexokinase, conserved site (InterPro:IPR019807), Hexokinase, C-terminal (InterPro:IPR022673), Hexokinase (InterPro:IPR001312); BEST Arabidopsis thaliana protein match is: hexokinase 2 (TAIR:AT2G19860.1); Has 2426 Blast hits to 2148 proteins in 325 species: Archae - 0; Bacteria - 92; Metazoa - 1300; Fungi - 606; Plants - 290; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G29140.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: shoot apex, embryo, hypocotyl, root; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT5G19700.1); Has 10278 Blast hits to 10238 proteins in 1962 species: Archae - 240; Bacteria - 7294; Metazoa - 150; Fungi - 320; Plants - 1306; Viruses - 0; Other Eukaryotes - 968 (source: NCBI BLink).
Link
InterPro Scan - TAIR