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Mutant Lines
54-3272-1

54-3272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 145225 [Map]; Strand: w
- AT2G01275.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: -701; Region: promoter
- AT2G01275.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: -937; Region: promoter
- AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
  Distance: -451; Region: promoter

CTTTGNAAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
TTCCCATCCT ACTTTCATCC GTCGATGGTA CGATACGAAG AAGAAGATTA 
AGATTAACGC CGTGAAGTAT GATCAGGCGA TTGCTGCGTT TTTAACGCCG 
AAGGAAGCGT TTTGCCGATT ATAATAAACT TTGTTTTGTG GGCCAAATCC 
GATTTATTAG TGGGCCGATT AATGGGCTTA AAGCAAATAA AAGCTGAACT 
GTTGTATTGA ATCTAATTAT ACTAATTCAA TAGTCAATTG TCCAATAACT 
GAAACATTTT ATGATTGACA CCTCAGCATA CTACTCTTTT TCTTACTCTT 
TCCTCTTTTC TTACAGAGAA TTAAGCAAAA TTTTCATTAA TTAATTCATG 
AATTGTTAAA AAAAAAAAAA ATGGGTTTTT NTTNNCCTTN TTNTTTTTTT 
TCNAAANCNT TTTTTTTTTT TTTTTTTCCC ANAACCTCNA AAANTCCNTT 
TNNTTTNTTT TNNAAANTTC CAAAATNTTT TTNAATNNAA AATNNCAAAA 
ATNGTTNNNN NNTCCNNAAN CTTAANTTTT TCCNANCANT CANCNGTTTT 
TTNTNNTTTN GAAGGGTTNA ATTNACCANN TNNAATTNCG GNTTTNAATT 
TTCCAAAAAT CGGCAAANNA AANAANNTCT CCAATTNCGG GNAANAATTC 
CCANGTTTNG GGGNGAATNC TTCTTNTTNG GNNAACCTNA ANNNANGGCA 
AACCCTTGAA ACTAATTNTT TTTTTAN

3 prime edge [+] show sequence

Chromosome: 2; Position: 145213 [Map]; Strand: w
- AT2G01275.1 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: -689; Region: promoter
- AT2G01275.2 - [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
  Distance: -925; Region: promoter
- AT2G01280.1 - [+] show detail - Cyclin/Brf1-like TBP-binding protein
  Distance: -463; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCT 
TGATTGAGAT TTGGTTTGCC GGAAAAAACC CCTACTAGAA TCGGCAATCG 
ACATCGCAGA GAATAGTAAA CACGAAACTG TACACTTTTA AAAATCTCTC 
ATACACCTTA GTTTTAACGT CAAAAAATAC ACAGAATTAT AAATCAATCA 
ATCAATTACT ATGATTAACA AAAAGAAAAA AAGTGATACG ATTGTGGTTA 
GTGGTTAGTT TTTTTTTTTT TTTTTTTNAN NGGGGGGGNN NTTNNNCCCC 
NNNAAANGGN NNCCCCCCCT TTTCCCCCGG GNNCCCCNTN AAAANNNCNN 
CCCNNANCCG GNNTTTTTNN NNANNNNCCN NNNNTNNGNN NCCNTTTTTT 
TTNNGNNNAA ANCNNNTTTT TTTTNCCCCN NAAAAANNNC CCNNGGGGGG 
GGGNCCCNTT TTTTTTTTTT TTTNCCCNAA AAANNCCCNT TNNGGGGGGG 
GGNGGNTNNN TTTTTTTNTT TTNCNNNGGG TTTTTTNGGG GGCCNTTTTT 
TTTTTGGGGG NNAAAANCCC CCNGNTTTTN NNNGNCCNCC NGGGCCCNNC 
NGGGGNCCCC CCCNANGGGA AATTTTNTTN GGGGGGGTNA ANGNNAAAAA 
NCCNNCNAAN ANNNNGNNAA TTTTTTNCCC CCTTTTTTTG GTTTTTTTTT 
TAAACCCNAA ANTTTTTTTT ACCCCGNNGG NATTTTTGGG AATNNNNNTN 
AAAAAAAGGG GGCCNCCCCC CCCGGCCCNC

AT2G01275.1

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G38070.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01275.2

Model type: Protein coding
Short Description: RING/FYVE/PHD zinc finger superfamily protein
Computational Description: RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G38070.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G01280.1

Model type: Protein coding
Short Description: Cyclin/Brf1-like TBP-binding protein
Computational Description: maternal effect embryo arrest 65 (MEE65); FUNCTIONS IN: RNA polymerase II transcription factor activity, cation:chloride symporter activity; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor TFIIB related (InterPro:IPR000812), Transcription factor TFIIB, cyclin-related (InterPro:IPR013150), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin (InterPro:IPR006670), Brf1-like TBP-binding (InterPro:IPR011665); BEST Arabidopsis thaliana protein match is: Cyclin/Brf1-like TBP-binding protein (TAIR:AT3G09360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR