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54-3343-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 241434 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: -523; Region: promoter
      • AT5G01640.1 - [+] show detail - prenylated RAB acceptor 1.B5
        Distance: 0; Region: exon1 (3UTR)
    Flanking Genome Sequence: 54-3343-1 - 5-prime edge 
    GTCAAGTATC ACAGAAAATT ACATTGCAAC AATCTCCACC TTCAAATCTC 
    TAAACACGCC AGATTCTGAG AACGGTAATT TACACGGGGG AAGCCGCTGA 
    GGAGGCAGAG GGTGCTACAG AGGGGATCGC GGGAACACCG ATGAATGAGA 
    GGAATCCGGA GGCGGCATGA TCTTGTTCGT CGAGGAAGAG ATCATCGGGA 
    GCTCTAAAGG CGCCATGGAC ACAGATTGTT GCTATTCCGA TCATGAGAGC 
    GGATATCAAT ACAGATCCGA CGCTTGTGAA GAAGATCACT GCGATCGTGG 
    AGAGGATTAG GCCACCGAGA GTTTCGTATT CGGAGAAAGA TCGGCCGAAG 
    AGGATAAGAG GACGATCTGA TGGACGGAAG AGGTAGAGGA AGAGCCAGGA 
    AGCGGCGAGA CATAGGAGGA GGATGAGAGA GAATGGGTGG GCGAGAAGAG 
    AGAAACCAAG GATCAGAGCG ACAATGCAAA CGTAATTCAC CCTGAAATAA 
    GAGGAATTTT TCCGGAATCG CGTCCCGGCC TCGGAGAGAG AGTCAGGCTT 
    TGTGAAAGCG GATCGATCGA GGAGCTCTGA CCACGGACGG CTACGAGATA 
    GACCACCACA GACCGTCTCG GTCACACCGT TGACAAATGC ACGGACGACT 
    GGAGGTTGCG ATTCCACCAC AGCGGT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 241318 [Map]; Strand: w
      • AT5G01630.1 - [+] show detail - BRCA2-like B
        Distance: -407; Region: promoter
    Flanking Genome Sequence: 54-3343-1 - 3-prime edge 
    TACTTGACCA TTGTTGCAAT GTAATTTTCA TTGAAGTCAG TCACCAATCA 
    CATTGAACAG ATGTTTTAAA ATGTCCACGT AAGCAATTAT TGTTTGGAAC 
    GATTTCGGGT TAGCATTCGT GCCGTTAGTT ACCGCAATAA AAGGCCGTGG 
    CAATATCACA CTTGTCTTGG AACGCTATGT CCGTAAAAAC CAAGCCCAAA 
    GTTAAAATAA AACCACGCGT CTCATAATTT CGGCCCAAAT CTTTTTCAAC 
    TTTCCCGCCT TTGTCAGAAC TTTTAACTTT TTGGATTTTT GGTGATGATT 
    TTGGTTTGGG GAAAGAAAAT AAAACAATAA AAATAAAAAT TCCGCACTCC 
    CGACTCCTCC CTCTTGGCGT GGTAGGCAAT TCTGAATCGC GAGGTTTAGT 
    TCTCCGGCTG AATCATATAA CGACGAATCG GAAAACTTGG AAACCCTAGA 
    ACTGAATAAA TGTCGACGTG GCATTTATTT TCCGATTCCA GCGGCGATGG 
    TTTCCGGTGG GAAGTCGCTG GCCGGATTCT TCAGTCCGTC TCGGATTCTA 
    CGCCAACCAA GGCGCTCGAA TCGACAGCTC CTCTACCTTC CATGGCCGAT 
    CTCTTGCTCC AAGGTGATTC TTCGTATCTT CCTTTTCTTT GTCGAATCGT 
    GTTTGTCATG TGACTCAAAG GAGATTGAAT TATTATTTGA TGCTTCAAG

AT5G01630.1

Model type
Protein coding
Short Description
BRCA2-like B
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with with both Rad51 and Dss1(I) or both Dmc1 and Dss1(I) in a tripartite complex.
Computational Description
BRCA2-like B (BRCA2B); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BREAST CANCER 2 like 2A (TAIR:AT4G00020.1); Has 281 Blast hits to 210 proteins in 91 species: Archae - 0; Bacteria - 4; Metazoa - 134; Fungi - 18; Plants - 61; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01640.1

Model type
Protein coding
Short Description
prenylated RAB acceptor 1.B5
Computational Description
prenylated RAB acceptor 1.B5 (PRA1.B5); CONTAINS InterPro DOMAIN/s: Prenylated rab acceptor PRA1 (InterPro:IPR004895); BEST Arabidopsis thaliana protein match is: prenylated RAB acceptor 1.B4 (TAIR:AT2G38360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR