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54-3346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425176 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -560; Region: promoter
    Flanking Genome Sequence: 54-3346-1 - 5-prime edge 
    CGACTCTCCA CACATGTTAC TTACAACTTA ATAGTTTCTC TATATCTCCT 
    TGAGATCTCC ATCCAGCTGT TGCTTTTTTT ACTAAACAAA ACTCCTCTTT 
    GTGTGAGTGA ATGAATGGAA GTTTCCGACT CTCTCTTCTT TTGTTTTTTC 
    AACATACTTC ATTCATTCAT TTTAGCATAA CAATCGGTGG TTGGGGATGA 
    TATGAGATGA GGCCCGATGT TATCCCTTTT CTTCAACTTT TTGACCTCTT 
    GTCTCTGGCC CTCTTCTTCC ACCACTTCCC ACACTTATTC TGATTCCAAA 
    GGCAAACAAG ACGGCCTTCT CTGGTACAAA GACTCTGCTC ACCACCTTTT 
    TGGTGATTTC TCCATGGCCG TTGTCCAGGC CAACAACCTC CTCGAGGATC 
    AGAGCCAGGT CGAATCCGGT CCTTTGACCA CCCTCTCTTC TTCTGGTCCC 
    TATGGAACCT TTGTTGGCGT CTATGACGGC CACGGAGGCC CTGAGACCTC 
    CCGTTTTGTC AACGATCATC TCTTTCACCA TCTCAAGAGT AACTACCTTG 
    GTGGTACTAC TCACCCCTTG AAATTTTTTT TTAACCTNGG GGAACCCNTT 
    TGGGAACCNN AACNTTNTTN TTTNNNGGGA NTNCCNNNNG GNNNNNNGAN 
    TCCCNNNTTT NGGGGGNGNG GNAAAAAA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425249 [Map]; Strand: c
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -487; Region: promoter
    Flanking Genome Sequence: 54-3346-1 - 3-prime edge 
    TGAAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCTAG 
    ATAGAGTGAA AGAAAAAAAG AAAAGACTCT CTCTGTTTTT GATTTCAGAT 
    ATTTATTAGG AACAGAACAG AGGAAGCCCT TTTCCTTGTA TATGAGAACA 
    GAGGAAAAGA AGAGAGACAA TTTATGGATC ACAAGATTTC CAGAGCCTCT 
    CTCTCTCTCT CTCAAATAAC TCTTCTTCTA TATTTGACCA TCAAAGAAAG 
    GACAAGAAGA CACACATACG TGTGCACGTG CACTCCTTAA CTCCTCCCAT 
    GTGGGATTTA CAAACATACA ATAGCTGTTC TCATTATTAT TATTTCCTTC 
    TTGCCTTGCA CCACCATTGT TAACTCTATT CAATTCAAAG TTTCAAACCC 
    TTTGACCAAT GCATCCCCTT ATTGGGCTTT GATTATATGG GCCCTTTCTA 
    TTTGATATTT TTCAATATAT GGCCCGTTAA TAAATTTAAT ATATAGCTTC 
    GGCCTTATAA GAAGAATT

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR