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54-3420-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1462172 [Map]; Strand: w
      • AT5G04960.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3420-1 - 5-prime edge 
    AAACTAACAA AATCGGTTAT ACGATAACGG TCGGTACGGG ATTTTCCCAT 
    CCTACTTTCA TCAAAGTCAC AGAATATCAG TCTCCGTGAA AGCCCTGTGC 
    GACGTGACAT TGCACAAAGA AAAATGTTTC GAGACCCTTG GATCGGCTCC 
    AAACGCGAGC CGATCAAGCC CAGAGGAGCT TTTCAAGTAC GCCGTCAAAG 
    TCACCATCAC GGAGCTCTCG AAAGTTCTCG ACGGATTCTC CAACGGCGAA 
    CACATGGATA ACGCCACGTC AGCAGCAATG GGGGCTTGCG TGGAGCTTAT 
    CGGGCTAGCC GTTGATCAAC TCAACGAAAC AATGACGTCG TCCTTGAAGA 
    ACTTTGACGA TCTAAGGACG TGGCTTAGCT CCGTGGGAAC GTACCAAGAA 
    ACGTGTATGG ATGCGTTAGT GGAAGCGAAC AAACCAAGTT TAACGACTTT 
    CGGAGAAAAC CATTTGAAAA ACTCGACGGA GATGACTAGC AATGCGTTAG 
    CGATCATAAC GTGGCTAGGG AAAATCGCTG ACACCGTTAA GTTTAGACGA 
    CGTCGTTTGT TGGAGACTGG TAACGCCAAA GTCGTTGTAG CTGACTTGCC 
    GATGATGGAA GGTCGGAGAC TTTTGGAGAG TGGTGATTTG AAGAAGAAAG 
    CGACTATCGT GGTGGCTAAA GACGGGTCGG GGAAATATAG GACGATTGGT 
    GAGGCTTTAG CGGAAGTGGA GGAGAAGAAT GAGAAACCTA CGATTATATA 
    TGTGAAGAAA G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 1462119 [Map]; Strand: w
      • AT5G04960.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3420-1 - 3-prime edge 
    GCTCTCCGTT ATTCTCCGTC GGTGGTTTCT TGCTGTTATC GCGAGCTGTG 
    GTTCCAACGA CGGCTCCGAC GACAATGCAG ACGAGAACGA TGGAAGATAT 
    AGCGATGATG GCAATTCTCT TCTTTGTCTT CCGACTTGCC TCAAGTTTCG 
    CNTTGCTCAT GCTCGTCGAG TCTGCCGTAG GAGGACATTT TTGTAATTTC 
    CTCCTAACCG GCCTCTCGTT TGTGAGATAT TGAAGTTTTG TGTGATCAAA 
    TGTTTTTGAT GTTATCTGTT TACTCGTGTA GAGAGGATAT ATAAGAGTCG 
    ACGATTTGTA TTTTTAATTA AAGTGAATGA CTAAACTTGA TTTTACGCGG 
    CACAAATATA TATTTTGCGT GGGAGGCACT AAGATGAATA ATTTGATTGT 
    TAACATTGCG AGTGCTTCTC ATGTTTCTTT GTGTATATGT TAGTATCTTT 
    CTCGTTTTAT TTTATTTTAA GATCGATCTT CCTGTTTATA TGCATCATTA 
    TAATTAAAGT TAATAAGATT TGATTTAATA ATAGTAGTCA TTACTCTTTT 
    TATATTATTT TCTCACTAAG CCATTCATTC GATTGTAGAA TT

AT5G04960.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower, root; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: root hair specific 12 (TAIR:AT3G10710.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR