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54-3497-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4885573 [Map]; Strand: w
      • AT3G14550.1 - [+] show detail - geranylgeranyl pyrophosphate synthase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3497-1 - 5-prime edge 
    CNGAAGATCG TCNTGAATAA GAGAGCTTGT GTGGATCATC TCAACCGCGC 
    AAGCAGCGTG ACATGGCANT AGCCTCGTCN CCTCCCACAA GCCTCGCAGA 
    CGGCNATGCA GAGCAGAGGC CTCACACGTT TTCCGCCCGC TAGCAATGAG 
    TACCGCACGG CTTCCTGGAC AGTGAGGGGT TCTCGGAGCT GGCACAGAAA 
    CGTCGAGAGC CGCATTTACA GATNCGGCTT TGCGGATCAT ATACAACCTT 
    GAAATCAAAA GCAGAGTTGA GATNATTGCA TTTTCCCTNT GGTGGAATCA 
    TGTCTNTGNC ACCTTGTGAG GTGAGGGCAG AAGAGGGAGA CAAACCTGAG 
    CGTGTTTTGA GACTCTTGAC GGAANATATG GAGTNGACTC TTCTTCCTCT 
    GGATNGGATG ANGAGGGAGA ATGANCTNAG ATGAACANTA ATANCCNTGG 
    CCTATCCANC GNNTNNNANT NGAACTNTNT ATATGTNGAG CTNTTAATAG 
    GTNGTTNTTT CTNCTTTANN CGTNCCTTGT ANATNGGNAN CAATGANGGN 
    AAACATANTN AANGNNCACT GGTTTNAGGA ATTGTNNTAT NTGNCNNACA 
    NTANAGTNTG ANATNCGTTN ACTTNATGNG NNTGANANNG NGANCANTGN 
    NNGNGCGTNC CTTNNNCANG GTNNGCATTC ANNAAANAAG NGAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 4885457 [Map]; Strand: w
      • AT3G14550.1 - [+] show detail - geranylgeranyl pyrophosphate synthase 3
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3497-1 - 3-prime edge 
    ATCTTCCGTG CATGGACAAT GCCGACCTCC GCAGAGGCAA GCCCACCAAC 
    CACAAGGTAT GTTGTTAAAT CATATAAAGG CTCAAAGAAA TGCTCACTAG 
    ATTTGAATCG TTCATTGATT TTAGTAAATA TTCACTCGTG TTGGACCAAT 
    TTTTGCTCAA ACAAGGTATA TGGAGAAGAC ATGGCGGTTT TGGCAGGTGA 
    TGCACTCCTT GCATTGGCGT TTGAGCACAT GACGGTTGTG TCGAGTGGGT 
    TGGTCGCTCC CGAGAGGATG ATTCGCGCGG TGGTTGAGCT GGCCAGGGCC 
    ATAGGGACTA CAGGGCTAGT TGCTGGACAA ATGATAGACC TAGCCAGCGA 
    AAGACTGAAT CCAGACAAGG TTGGATTGGA GCATCTAGAG TTCATCCATC 
    TCCACAAAAC GGCGGCATTG TTGGAGGCAG CGGCGGTTTT AGGGGTTATA 
    ATGGGAGGTG GAACAGAGGA AGAGATCGAA AAGCT

AT3G14550.1

Model type
Protein coding
Short Description
geranylgeranyl pyrophosphate synthase 3
Curator Summary
Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots.
Computational Description
geranylgeranyl pyrophosphate synthase 3 (GGPS3); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: Terpenoid synthases superfamily protein (TAIR:AT3G14530.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR