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54-3514-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425409 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -3; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -327; Region: promoter
    Flanking Genome Sequence: 54-3514-1 - 5-prime edge 
    ATGAGAACAG AGGAAAAGAA GAGAGACAAT TTATGGATCA CAAGATTTCC 
    AGAGCCTCTC TCTCTCTCTC TCAAATAACT CTTCTTCTAT ATTTGACCAT 
    CAAAGAAAGG ACAAGAAGAC ACACATACGT GTGCACGTGC ACTCCTTAAC 
    TCCTCCCATG TGGGATTTAC AAACATACAA TAGCTGTTCT CATTATTATT 
    ATTTCCTTCT TGCCTTGCAC CACCATTGTT AACTCTATTC AATTCAAAGT 
    TTCAAACCCT TTGACCAATG CATCCCCTTA TTGGGCTTTG ATTATATGGG 
    CCCTTTCTAT TTGATATTTT TCAATATATG GCCCGTTAAT AAATTTAATA 
    TATAGCTTCG GCCTTATAAG AAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425293 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -443; Region: promoter
    Flanking Genome Sequence: 54-3514-1 - 3-prime edge 
    GTTCTCATAT ACAAGGAAAA GGGCTTCCTC TGTTCTGTTC CTAATAAATA 
    TCTGAAATCA AAAACAGAGA GAGTCTTTTC TTTTTTTCTT TCACTCTATC 
    TCTCTCCACA CATGTTACTT ACAACTTAAT AGTTTCTCTA TATCTCCTTG 
    AGATCTCCAT CCAGCTGTTG CTTTTTTTAC TAAACAAAAC TCCTCTTTGT 
    GTGAGTGAAT GAATGGAAGT TTCCGACTCT CTCTTCTTTT GTTTTTTCAA 
    CATACTTCAT TCATTCATTT TAGCATAACA ATCGGTGGTT GGGGATGATA 
    TGAGATGAGG CCCGATGTTA TCCCTTTTCT TCAACTTTTT GACCTCTTGT 
    CTCTGGCCCT CTTCTTCCAC CACTTCCCAC ACTTATTCTG ATTCCAAAGG 
    CAAACAAGAC GGCCTTCTCT GGTACAAAGA CTCTGCTCAC CACCTTTTTG 
    GTGATTTCTC CATGGCCGTT GTCCAGGCCA ACAACCTCCT CGAGGATCAG 
    AGCCAGGTCG AATCCGGTCC TTTGACCACC CTCTCTTCTT CTGGTCCCTA 
    TGGAACCTTT GTTGGCGTCT ATGACGGCCA CGGAGGCCCT GAGACCTCCC 
    GTTTTGTCAA CGATCATCTC TTTCACCATC TCAAGAGTAA CTACTTGTTG 
    TTACTACTCA CCACTGAATT TTATTTAGCT AGGGAACCAT TGGAACTGAA 
    CATTCATGTC TGCAGGATC

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR