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54-3540-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26419594 [Map]; Strand: c
      • AT5G66055.1 - [+] show detail - ankyrin repeat protein
        Distance: -330; Region: promoter
      • AT5G66055.2 - [+] show detail - ankyrin repeat protein
        Distance: -330; Region: promoter
      • AT5G66060.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66060.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3540-1 - 5-prime edge 
    GNGANTAAAC TAACAAAATC CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCC CAAAGGCGAG AAGAATCAAA ATCACGAAAG 
    TAGACATGAT CAATACGCCG AATACAAGCG TTGAATGCGA GGATTTACGA 
    GCTGAAGGAC GATGATTCCT CTGTCTCGCC ATCATTTTAG CAACAAGGAT 
    GAGATCCGGC CGAGCGAGAT TCGAAAGAAG CAGGGCAGCA GCAACAATGG 
    AGTTTATTTT ATTTTCTTTC TCGTGGTGGC TGGTAGATTG ACTACTAATC 
    AAAGGACGAA CGGGAAGTCA GGCCCATATG TTTAAGTAAG GCCCATTAGA 
    AAGTGAGGCC CATTGAAATT GTCGGATACT ACATCAGAGG CCGGCGAGGA 
    GGAGAGGAGA AAGCTCCGTT ATTCAAGATT ATTCCGATAA TGCAGTCACT 
    CTCCACCCCA CACACCATCT CTCTTCTTCT CCCCAGAACC TCTCCGTCTC 
    GTCTTTCTCC CTCTCTTCAC TCCCTTGCTT TCCCCACTCG ATTACGGTCT 
    CTTTCCTATT CTTCTCAAAC GTCGATCCTC CCCGATGCCG GCGATGATTT 
    CATTGTCGGT GACTGTCTCG TCTACGAGGA CGGCGTCTTC GAAGATCCTT 
    ACCTGGAGAA GGAGGTCACT TCAGGTTGCG AAGCAGGAGC GCAAGAAGAA 
    TCGGCGTGGC GGGGCTAAGA GATTAGATGA ATCCGAGATT GAGCCCGAGA 
    ACCTCGTGCC GGAGGAATGG AGGGATATTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26419599 [Map]; Strand: c
      • AT5G66055.1 - [+] show detail - ankyrin repeat protein
        Distance: -335; Region: promoter
      • AT5G66055.2 - [+] show detail - ankyrin repeat protein
        Distance: -335; Region: promoter
      • AT5G66060.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66060.2 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-3540-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    AATTCTCTCG GTGCCCAGCA ACAATGCCGG CTCCTCCAAA GCCAATGATC 
    TCACTTCTAT TGTCCGAAAA ACACTTCAGA GGTAAGATAC CATCCCATGC 
    TAATATTGAA TTTCAATTTA GTGTGCTTCA AGATCGGGTT AACCTTTTCC 
    TTCTTTTTTT TTCGGTAGAG GTGGGGAAGA TGATTCAGAC AACGAGCGTT 
    GGGTTGAAAT AATCTCTTGG GAACCCAGAG CTTCTATTTA CCACAATTTC 
    TTGGTGAGCC TATGACCTAT CCATATACAG ATTTGTTTTT TTTTTCCTCN 
    AAAATNNGTT TGGGANCCCA TNTTTTTNTT TTTCCAANGN TTATTTNNAN 
    ATNTNANCAN NGTANGGANG GNCTNGATNT NCGGAAANAA AACTGTNTGN 
    GTTTAAAAAN CNANTGAAAA AATNGNGGNA NCTNGGATGG GGANGNGNTN 
    NNGGNGNATT GGNTTNGCCC TTGGNNNNNT AACCTTCCCN GGNTNNNGGN 
    NNNANNNNGG GGGANNGNNN NNNTNNNANN NANNNNNNNN AANNCNNNNN 
    GGGGGAA

AT5G66055.1

Model type
Protein coding
Short Description
ankyrin repeat protein
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
ankyrin repeat protein (AKRP); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 83523 Blast hits to 28077 proteins in 1268 species: Archae - 145; Bacteria - 7202; Metazoa - 43238; Fungi - 6726; Plants - 3393; Viruses - 1185; Other Eukaryotes - 21634 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66055.2

Model type
Protein coding
Short Description
ankyrin repeat protein
Curator Summary
A locus involved in embryogenesis. Mutations in this locus result in embryo lethality.
Computational Description
ankyrin repeat protein (AKRP); CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G40160.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66060.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G20270.1); Has 2544 Blast hits to 2536 proteins in 339 species: Archae - 0; Bacteria - 388; Metazoa - 1050; Fungi - 75; Plants - 443; Viruses - 21; Other Eukaryotes - 567 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66060.2

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G20270.1).
Link
InterPro Scan - TAIR