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Mutant Lines
54-3553-1

54-3553-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 2; Position: 19669738 [Map]; Strand: c
- AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
  Distance: 0; Region: exon1 (5UTR)
- AT2G48100.1 - [+] show detail - Exonuclease family protein
  Distance: -763; Region: promoter
- AT2G48100.4 - [+] show detail - Exonuclease family protein
  Distance: -763; Region: promoter
- AT2G48100.3 - [+] show detail - Exonuclease family protein
  Distance: -817; Region: promoter
- AT2G48100.2 - [+] show detail - Exonuclease family protein
  Distance: -947; Region: promoter

GNGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCCAG AGTGACATCC ATGGCAAAGA ACTCATCATC 
ACAGAGTAGT AGCAAGAAGA AGCAAGAAAA CAGAGTGTGC GAGAAGATCT 
TCAGAGCAGT GACTAGTCCT GTCCGAACCG TTCGTCGCAT CTCCACCAAA 
TCTTCACCAG CAGAGGCTGT TCGCGTCAAA TTTGCAGAGA CATCGGCTAG 
GCCTAGGGCA GCCAAACCCA TTACAAAGGT GGAACCGGTG ATCGCTCGAG 
TGGATACTAC GATCAAAACG GACGAGAGGT TCACCGAGTA TATAAAGAAA 
GCGAAGCTGA AGATAAGGGC GATGACGAAT GTCGGTGATA TGATGAAGGA 
GGATGCGTGG GAGACAAGTG ATGAAACAGA TCAGACACGT CATGATCATC 
GTCACCACCA TGTGCCTATC TCTCACGTAG GTAGTAGTGG CCGGAGATCA 
TCAGATCAGT TCTCTGAGTA CATAAAGAAG GCAAAGATGA AGCTCAGTTC 
CTCTTCCACC ATTGCTCGTG CTAACCCGAC TTTCAAGTGA TGGATTTCGA 
CAAATTAATG ATTTGAATAA TCCTCTGGCC TGAGAGATTG ATATATATGT 
ATATGTTTTG TGGTGTGTGT TGACAAGTAC GGACATGGAT TTGTCGTTTT 
AATGAAAACT ATAATACTAG TGATCATTTT AATAATTTTG TTGTTACATC 
GGTAGCGAGT GGTTTCTTTT CTTAAGAA

3 prime edge [+] show sequence
1. Chromosome: 2; Position: 19669783 [Map]; Strand: c
  - AT2G48090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -19; Region: promoter
  - AT2G48100.1 - [+] show detail - Exonuclease family protein
    Distance: -718; Region: promoter
  - AT2G48100.4 - [+] show detail - Exonuclease family protein
    Distance: -718; Region: promoter
  - AT2G48100.3 - [+] show detail - Exonuclease family protein
    Distance: -772; Region: promoter
  - AT2G48100.2 - [+] show detail - Exonuclease family protein
    Distance: -902; Region: promoter
Flanking Genome Sequence: 54-3553-1 - 3-prime edge
```
GATGTCACCT TGGGAAGTAC TAAAGGTGAT CTGTGCAGAG AAGATAGTGA 
CATTAACGAG CTTTTTATAA TGCAAAATCT ATGTGATTTT ATCTTTGTTA 
ATTGCAGAAT AACGTGTTTC AACATGCAAC AAGCGAAGAA ATTACAACNT 
TGTTGAAAAG AGGAAAGTTG GAAACTTTTA CAAGTTTTTC AAAAAAGGAA 
GAGTGATGTT AGAAAGGGAT CGGATTCTGA TTCCACTATG TTTTCTTTCT 
TTCTTTCTTC TTCGTTGTTT TTGTTTTGGA TTGTTACGTT CCTGTCAGGA 
TTTGAGAATC ATGCATCAGC TGTCACTCCT CTCAGGAGGG GGAGATTATA 
TCTACTTGTA ACATACTAAT CTTCCAATAA ATAAGCACTT CACATATTAT 
TAAAATACAG TAGATTCTCA TAATTAGGCC ATTTTCCATA AGCT
```

AT2G48090.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, root, flower, carpel; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.1

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 1569 Blast hits to 1569 proteins in 234 species: Archae - 0; Bacteria - 15; Metazoa - 734; Fungi - 438; Plants - 246; Viruses - 0; Other Eukaryotes - 136 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.2

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.3

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT2G48100.4

Model type: Protein coding
Short Description: Exonuclease family protein
Computational Description: Exonuclease family protein; FUNCTIONS IN: exonuclease activity, zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR