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54-3559-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433877 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -779; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -99; Region: promoter
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -187; Region: promoter
    Flanking Genome Sequence: 54-3559-1 - 5-prime edge 
    TAGGTGGTGG TCACTCTCTC AGGCCATTGG TGTAATCTCC TACAACTCAC 
    CCTACGCTAA AACAGGTTAT TTATTTTACT CACGTGAGAT AGGCGGTCTA 
    GATATTGACA CNGTCACGTA AAGACCTCAC TACTTGTCTT CTCATGTACA 
    CCTCGGATAA AAACGATGCC GTTTGATTGA CCCGCGAAAA TATCGAGCGA 
    TGAAATAGTC ATTTAGTGGA GCGAGCCAAC ACTCACTCCT CATTTCGAGA 
    CAAAAACGCG GAAGGCGACG ACACGCCGTT GAGGAGGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433761 [Map]; Strand: w
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -663; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -303; Region: promoter
    Flanking Genome Sequence: 54-3559-1 - 3-prime edge 
    ACCACCTACC CCACGCCGTC TCCGAAGGCT TCACCAAACA ACACCACGAA 
    ATCAATCCTC TAATGTATTT TTTCAATTCA GTCTTCTTCT TCTTCACCAA 
    CCCAATTTCT TTTCTTCAAC TCTCTCTTCT CCCCAAACCC GACTTCTGAT 
    CCGCATCGAT TTCCATGGCA GCCAACACCA TTTCTCTTTC CAACGTCGCC 
    GCCTCCAAGA ATCTCAACTC CTTTCAAAGC CGTGCCTTTA TTGCTCCACC 
    AACTATTTTT TTCCCTGTGG CTTCTGCAAA GTCTAAACCT GGGGAACTTT 
    CTTTATCTTC CACGACTCTT TCCAGGTCTC GTGTGCGCGC CGGTGCTAGC 
    CAGCTCATGA ACGAACCGCT TAACGATCAA CGCTCCATCT CTTCTCCCAC 
    TGTCGTCGAG GTTGATCTTG GTGACCGGAG TTATCCGATC TATATCGGCG 
    CCGGCTTGCT TGATCACTCA GAACTTCTTC AAAGGTTTCA TCTTTTGTCC 
    CATAAGACCA TTTCATTTTA ATTTAGTTTA GCTTTTTGAG CTTTAATTGT 
    CGCCACCATC AAACGGTCGA GTTTTGACTT CTCTTTAAGC GATAGTATCG 
    ATTTAGTAAG GTGTTGATGT CGTTGGAGAT GACTAGTGAG CTTATTTAGG 
    CCAATGGTTT TTTGTTTAAA AAAATTTCAG AGCACATACA ATACTCAAGT 
    TTTTTAGAGT TNGGTCTTGC ATAATTGGTG ATAAATGN

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR