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54-3564-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103327 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3564-1 - 5-prime edge 
    GCTCAGGCGT GTGAGGTGGC GTTGTTAAAT GAGTGATTCC ATTGGAGGAG 
    AGGAAGGAGC GTAGAGCAAT GAACTCGCCA CCATTGTCCG AGTAGAGATG 
    GATGATTTTG CGTTGAAATT TGTTTTCCAC CAGGGCCTTG AAGGTCATGA 
    ACACATCTTT AACATGGGAC TTTTGCTTGA TCGGATAGAA CCATGAGTAT 
    CTTGTATAGT GATCTACAAT AACAAGATAG TATTTGAAGT TGTCAATGGA 
    CACTATTGGT GATGTCCAAA GATCAGTGTA TAGATATTCA AGTGGTTGAG 
    TAGAGGTAAT AGTGTTTGTA TGAAAGGGAA GTTTGTGTGT TTTATTCAAA 
    AGGCAATCAG AACAATGGAA CTGTTTTTGC AAAGAATGAG AAACAGGAAG 
    GGAAAATTGA GAAACAACAA CTTTTAAAGT AGATAAAGAC GGGTGGCCAA 
    GACGTGAATG CCATGAGGTG AGATCGGTTT TTGGAGTGGT TGTAGTGAGG 
    TGGGATGACG GTTTAGGAGG ATTCACTGGC CATTCGTACA GCTCGTCTCT 
    AGTCCTGCCT TGGAGCAATT GGACCCCCGT TTTGAGATCC TTCACCTGAA 
    AATGTGCAGG AAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22103259 [Map]; Strand: w
      • AT1G60020.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-3564-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGCC 
    CTGAGCACAA CGGCATCTCC GAAAGGAAGC ACCGTCATAT AGTAGAGACT 
    GGTCTTACAC TTCTTGGACA AGCCCGTATG CCAAAATCGT ACTGGAGCTA 
    TGCATTCACC ACTGCCATAT ACCTCATCAA TCGAATGCCA AGTGATGTCA 
    TTGGTGGCAT TTCTCCATAC AAGCGGCTCT TTGGTCAAAA CCCCAACTAC 
    CTCAAACTTC GGGTGTTTGG GTGCCTCTGT TTCCCGTGGC TTCGACCGTA 
    TACTACAAAC AAGCT

AT1G60020.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:AAC02672 polyprotein (Ty1_Copia-element) (Arabidopsis arenosa)
Link
InterPro Scan - TAIR