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54-3568-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26441603 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 54-3568-1 - 5-prime edge 
    GACTGGCACC TTTGCTTTTA ACACGGAGCC AATACTTTGG ACGCTGCAGG 
    GAAGATATTC CTAAATAAGC T

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26441533 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon14 (CDS)
    Flanking Genome Sequence: 54-3568-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATGCC 
    ACCACTTGGT TGGAACACAT TCTTCATATC TAAAGCATCC GCACAAGGTA 
    TGCAGACACA GGCTCATGCT ATCCATAGAA AGTTAAACAG TTGCCTTTCC 
    CTCATAATTC ATTTTTTTTT TATCATTCAT GATNTAGGAA GCANCANTCA 
    CAAACNCTNT TNAGNGATGC TTANTCCGAT NAACAATNCA ACTGAAATNG 
    GNCCAGGAAA TCTAAANATG GGGTTTNNTT NAAACTNTGG TCGTNTCNAA 
    CGGATGTCCA NCTCCAAAAC AGGAGTAANG TTTCGTTNAC TCCTTCACAC 
    TGAATCTTTT NGGTTNATTC ATTNGGTTAN ACAAAATATT CAGNCNCAAT 
    NGCTTTTAAT AAANATNTTT CAGGCTGACN TAAAGGNGGA TCAAAACTAT 
    TTNTGGTNTG CTTNAAATGT NGGGGACCCA AAAAATCCCC AGGTTTNTGG 
    NGCATATNTA TTTCNACCTA ANGGTTCCTT GGCGTATCCT GTTTCGTCGN 
    CCAAAGNGAG TNTATNAATN CTNTAAAANC ATTGAAATGC TGAGGTTNTA 
    TCATNAAAAT NTTANATCAT AATTTTTTTT AGCTTTTNTA CACANNATCG 
    TTATGTAGGA ANCANATAAT TNGNCTTTGT AGTTTANAAA TNCAGATAAC 
    CCCTTAAAAT CTATNTGATA AAAGTAATCC ATGTAAATAT TTGTTTGGAA 
    NATTTGTACC GGGACTACTG CTTTCATTGG

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR