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54-3612-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233952 [Map]; Strand: w
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -589; Region: promoter
    Flanking Genome Sequence: 54-3612-1 - 5-prime edge 
    CGTGCAAGGG CGTGGCGGAG GCGCGTGGGG CGAATCCAGG AGGAGGAATG 
    TAACCGGAGG TTTCTGTAGG GTTTGGTAAA GCATTGAACA TGGTCGACAT 
    TGAAAAGGTA TTATCGGAGA CTGCCATTGA TGTATTTCTT GATCTACAGA 
    AATTTCTCTA GAAAAGGGTT TAATCAGTTN GTGTGATTNC TGGAGAAGTA 
    TGAGAGATTT GTGAATGAGA GATCTGTGGT GATGCGTAGA GTATTTATAG 
    AAAAGTTAGG GCTTTTGTTT TTCTAGTTAC AATTACACAA CTCGGATTCC 
    TACCAGGAAA AGGAAACTTA TTTGGTGGAG TATCCTTTTT TCTTTGTGTT 
    TTAATAATAA TAATCTATCT GAGAAAAATG GAAAAAAGTA GAATTTTTCT 
    GTAAAACGAC AATATTTAGG CACGAAAATC AAATTAAAAA AGGAAAAGTA 
    GGAAGGAGAT CGTAAATTTG ATCCCGTAAA TTCGAAGGGT ATTAGAAGGG 
    TATAATCGTC ATCTGCCATT GCCTCTTTTT CGAGGTCAAC ATCGGCTCAT 
    TGACGAATGA CGACTGTGAA TAGAAGATAC TGATACGAAC GAAACTTCGG 
    CCCACATTGG GTTTATGGGC CCAATATAAT ATATATACGA TTCATTTTCT 
    TCTCGCAGTT TGTTTTCTCC TCTTGTTGCT GGGTTCTCTT CTCGCTAAAA 
    CCCAGATTGC AGCN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24233836 [Map]; Strand: w
      • AT5G60180.1 - [+] show detail - pumilio 19
        Distance: 0; Region: exon1 (CDS)
      • AT5G60190.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: -705; Region: promoter
    Flanking Genome Sequence: 54-3612-1 - 3-prime edge 
    CTTGCACGCA GCTCTGTTCA ACCTAATGAC TGACGGCGAT GGTGTGTCTT 
    ACTTTAAAGA GATGATCTCA AAGTCAGACA AAACAGAGCT TCAGAGGATG 
    GCCTCGTTGC TTACGTCTGA CTCCGATTAC TTCATGTCGA TCGTCACAAC 
    CAAGTTCGGC TCGAGACGCG TGCAGAAGCT CCTCGGCAAA TCAGATGACG 
    TGGACGCCTT CTTCTGTGCC GCTATCTTGC GCCGCTTCCT CCACATCACG 
    ACCGACAAAT ACGCATCCTA CGTGACGATA CGAGCCATGG TCGTTTTCGA 
    CAAGGTGATG AAAAAGGCAT TGTACGAGCG CATTCTCTAC CACGCTCTCG 
    ACCTAGCGTG TGACCAGCAC AGCTGCATCG CGCTCAATGA TATCATAACC 
    GACGCTGACG ATCCTTACTA CAGAGATCAG CTACTAGAAT TGGTCGTATC 
    CAACGCTCTC CGGCTAAGCA ACGATGCTTC AGGGAACTTT GTGGTCCAAC 
    ATGTGCTTAC ACTGTATGAC TCGCGTTGCA TTCACAACAT CGCCGTTAAT 
    CTTTATGGTC AGTGCATTGA GCTATCGTTT AAGAAGTATG GAAGCTACAT 
    CGTGGAGAAG CT

AT5G60180.1

Model type
Protein coding
Short Description
pumilio 19
Curator Summary
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts.
Computational Description
pumilio 19 (PUM19); FUNCTIONS IN: RNA binding, binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 18 (TAIR:AT5G60110.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G60190.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Curator Summary
Encodes a protein that can cleave residues from the C-terminus of RUB1 to prepare it for conjugation to target proteins.
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity, NEDD8-specific protease activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR