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54-3719-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21602750 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-3719-1 - 5-prime edge 
    ATCGAATGAG AGATGAGCTT TTGCAGCCGA CACCTTGGCT TTCTCTTCCT 
    CCACTAGCGC TTCCATTTTT GAACACTTGA GCTTCAAGTC CTTCAACTTT 
    TCCTCCATTT CTCGTAGCCG AGTCTCACCA GCTTCATCAT CCTCCTTCTT 
    TTGTGCCACC TCATAAAGTT TGTTCTCCAA CCAATCCAAC TTAAACCCTG 
    CATTTTTCAT ACATCCAATT GCAATATATA CGTCACACAA ATCATCCTTG 
    GAGAGTTCTT GAGGTGACTG AGATAAAGTC TCAATCAGAC TGAGTAGCAA 
    ACTCATGTAA CCAGTCCTAA GACTTGAGTT CTTTGGGTGG ATTTCAGATG 
    CAATCTCTGG GTGTCTTTCA AAAATATGGC TAACAGATTT TGCCTGCCAA 
    ATGAAAATAC AAGTATAAAT TCGCATCCCA ATTCAAAGAC AGTTTAGGAG 
    ACATGCACCT CAAAAAAGAA CCATATAATA GAACACTATC TATCTACACA 
    CAAAGTCTGT AACATTCTTA AATTGTATTT TTACCTGTGA AGGAAGAAGT 
    TGAAAGCCAT TAACATGTAT GGTTTCCTTT ACTGTTGAAA TACCTTCTGA 
    TACATCTACG TCTCCAATAA CTTCAAGGAT ATCTATCTCG GCAACAATTT 
    TGAGTTCCCC GTTTACTAGA AATCCACTAT CTTTGGCATG GGATTTCATT 
    TAAG

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 21602679 [Map]; Strand: w
      • AT3G58400.1 - [+] show detail - TRAF-like family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-3719-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GATGATGTTG TTTGATGTTC TTGTGTTTTT AGGACACTTG GAGGTTGGTT 
    CTGCTTAGTG TGCTGGTCTG TTCGTTTATA GGTTCGTAAT GATAGTCTTC 
    TTAAAACTTA AGGAAGATAA AAGAGACATG TCTTGGAAAT TTTCAACAAT 
    GTTTTCAAGA GGAAGTTCTA GGTTTCTTCT AGAAAATATT GAGTTTCTTG 
    CTGTTAAAGT AATGTGTTTT GAGAGTGACA AGACTAATCA CCATAAAAAC 
    AAGTGGACAA ATATTTTAAG TTTCTTGACT AATCTCACAT TCTCGCTCTC 
    ATATCCAAAA ACATGGCTCT TTTGTTGAGT AAGTGGGAAA TCACTAAGCT 
    NCCATCCCGG NCCNTNAACC ACGCNNGCCC CTATNGNTTT ANGTCTNANN 
    ACACGGANAC NGTANTNACG CCTTTAAGAT CTNNTNCCGG ATNCACTTCT 
    NATACTCCNT CATACACNTG NCATGNTGTC ATACTCAACT CCAAANCCTT 
    ATCCNGCCTT CNTCTNCCNT CTCAAAGCTA CCAGC

AT3G58400.1

Model type
Protein coding
Short Description
TRAF-like family protein
Computational Description
TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: RESTRICTED TEV MOVEMENT 3 (TAIR:AT3G58350.1); Has 513 Blast hits to 461 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 505; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR