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54-3727-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30197275 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G80320.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3727-1 - 5-prime edge 
    CTCGGAGTGA CTCACAGAAT GCTTCTTCTC ATCCATTCCA TAGCTTTCAT 
    ACAACATCCT CATCACCGTC TGGTCTAGCT CCGCCATTGC CATTGCATAC 
    ATATGTGTGG TTTGACTTGC AAATCATCTG AGATGTGACA ACAACGACAT 
    AGATGAAATG AAAGAAAGTC TTTATGTGTG TGTTTTTACC AGAAGGGATC 
    GTTTCCCTGT GGCCAGAGTA GTTTAGAGAA GTCTTTGCAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30197391 [Map]; Strand: c
      • AT1G80325.1 - [+] show detail - other RNA
        Distance: 0; Region: exon2 (NonCoding)
      • AT1G80325.2 - [+] show detail - other RNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G80320.1 - [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-3727-1 - 3-prime edge 
    ACTCCGAGTC AACTCGATAC CTGTTGAGGA TGCTGAGTTA CAGGAGACAG 
    CAAAACGGTG AAGCAAACAC TGGTTTCGTG TCACACACTG ATAAGAGCTT 
    CATGAGTATC CTCCACCAGA ACCACGTCGG AGGTCTCCAG TTGAAAACCA 
    TGACCGGCCA ATGGGTCGGG TTTAACCCGT CCCCAACAAG ATTCGTCGTT 
    CTCTCCGGCA TGGGTCTCAC GGTGAGCTCT AAACCAAATC CGATTAGTCG 
    AAACACCTAG ACATAGCAAT AAATGTGAAA TCTTTTTGTT GGTGATGAAG 
    GCGTGGAGTA ACGATAGGAT AAAGGCATGT TACCACAAGG TAGTGATGAG 
    TGCAGATGAG ATTCGATACT CTTTAGGGTT TTTCTCCTTC CACAAAGGAA 
    CGATCCGTAC GCCGGAGGAG CTCGTCGATG ACCAACATCC CCTCCGCTAC 
    AATCCTTTCG AGCACGACGG CCTCTTACGC TTCTACGAAT CGTACATCAA 
    TTCTCTCAAG AAATCCAGCG AAGATC

AT1G80320.1

Model type
Protein coding
Short Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Computational Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G15540.1); Has 5609 Blast hits to 5543 proteins in 727 species: Archae - 0; Bacteria - 610; Metazoa - 47; Fungi - 436; Plants - 3975; Viruses - 0; Other Eukaryotes - 541 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80325.1

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR

AT1G80325.2

Model type
Other RNA
Short Description
other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT1G80320
Link
InterPro Scan - TAIR