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54-3794-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425426 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: -20; Region: promoter
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -310; Region: promoter
    Flanking Genome Sequence: 54-3794-1 - 5-prime edge 
    GAAGAGAGAC AATTTATGGA TCACAAGATT TCCAGAGCCT CTCTCTCTCT 
    CTCTCAAATA ACTCTTCTTC TATATTTGAC CATCAAAGAA AGGACAAGAA 
    GACACACATA CGTGTGCACG TGCACTCCTT AACTCCTCCC ATGTGGGATT 
    TACAAACATA CAATAGCTGT TCTCATTATT ATTATTTCCT TCTTGCCTTG 
    CACCACCATT GTTAACTCTA TTCAATTCAA AGTTTCAAAC CCTTTGACCA 
    ATGCATCCCC TTATTGGGCT TTGATTATAT GGGCCCTTTC TATTNGATAT 
    TTTTCAATAT ATGGCCCGTT AATAAATTTA ATATATAGCT TCGGCCTTAT 
    AAGAAGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26425363 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (5UTR)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -373; Region: promoter
    Flanking Genome Sequence: 54-3794-1 - 3-prime edge 
    ATTTAAAACG GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC 
    CTGCTCTCTT CTTTTCCTCT GTTCTCATAT ACAAGGAAAA GGGCTTCCTC 
    TGTTCTGTTC CTAATAAATA TCTGAAATCA AAAACAGAGA GAGTCTTTTC 
    TTTTTTTCTT TCACTCTATC TCTCTCCACA CATGTTACTT ACAACNTTAA 
    TAGTTTCTCT ATATCTCCTT GAGATCTCCA TCCAGCTGTT GCTTTTTTTA 
    CTAAACAAAA CTCCTCTTTG TGTGAGTGAA TGAATGGAAG TTTCCGACTC 
    TCTCTTCTTT TGTTTTTTCA ACATACTTCA TTCATTCATT TTAGCATAAC 
    AATCGGTGGT TGGGGATGAT ATGAGATGAG GCCCGATGTT ATCCCTTTTC 
    TTCAACTTTT TGACCTCTTG TCTCTGGCCC TCTTCTTCCA CCACTTCCCA 
    CACTTATTCT GATTCCAAAG GCAAACAAGA CGGCCTTCTC TGGTACAAAG 
    ACTCTGCTCA CCACCTTTTT GGTGATTTCT CCATGGCCGT TGTCCAGGCC 
    AACAACCTCC TCGAGGATCA GAGCCAGGTC GAATCCGGTC CTTTGACCAC 
    CCTCTCTTCT TCTGGTCCCT ATGGAACCTT TGTTGGCGTC TATGACGGCC 
    ACGGAGGCCC TGAGACCTCC CGTTTTGTCA ACGATCATCT CTTTCACCAT 
    CTCAAGAGTA ACTACTTGGT GGTACTACTC ACCACTGAAT TTTATTTAGC 
    TAGGGAACCA TTGGAACTGA ACATTCATG

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR