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54-3828-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6135441 [Map]; Strand: c
      • AT3G17910.1 - [+] show detail - Surfeit locus 1 cytochrome c oxidase biogenesis protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 54-3828-1 - 5-prime edge 
    GCTGAATTTA ATCTGTCTCT GCATAGATCC GACATTTCTA TTCAGATGTA 
    TCCCATAAAA TTACAGTTTC GAGCTAAACC AAATATATGA GAAGCCAACC 
    TTATGACAAA GGAAAAAGTT TCTGAACAAG ACCAACCTTG GTAATCACTG 
    GCGTCTTAGA CCAAAATTTC CACCAGGACT TTGGTTCATT GGACGGTGAT 
    TTAGCTTTTG TTGACTGGTT TGCAATGAAC TCAGCCTCTG CGGATTCTTG 
    TGACTTCTCT CTCCAACTTC GAGGAACCCA TCCACGATTC ACCAGAATAG 
    GCGATTGCAT GCTAGTGGAC AAAGGAAAAG AACAATCTGA CTTCAGAAAG 
    TACAAACAGT TAACAGCTAC AGCTAAAACC GGCAGCCAAA AACTATGACA 
    AAGCCAAGAC CATTTAAGGC TTAAGTGACA CTGCCGCAGA CCATTCTGTC 
    TAATAAATTC TCGAACTACT CACTAGTTAG TTACAGTATA AAAGTTATTA 
    ACCACGAGAT TTTAGTATTT TAATCGCAGC CAATCAGAAT ATGGCAATAG 
    TATAAGACAA GTATGGTCAA GTGTTTAGAG AGGATTAGAA AACCAATGGC 
    CTATTATATC CCGAGAAAGA GCTATAATAA TTTCACAACA ATAATTGAAA 
    ACAGAAAGGT AGGTAACCCA ATGGCCTATT ATATNCCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 6135505 [Map]; Strand: c
      • AT3G17910.1 - [+] show detail - Surfeit locus 1 cytochrome c oxidase biogenesis protein
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 54-3828-1 - 3-prime edge 
    TTGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    TGAATTCAGC TATCTGCAAA GTTTCACTTC TTTGTTTATT GTCTTTAACA 
    AATCTCTTGC ATACATTGTG ACTCGTGAAA ACTGAAATCT TGTAGGAACA 
    TATATCTGCG GTTAAGCCTG TAGAAGTAGT TGGCGTAATC AGGGGAGGGG 
    AGAACCCGAG CATATTTGTT CCATCCAATG ATCCAAGTAC CGGGCAGTGG 
    TTCTATGTAG ATGTTCCTGC GATGGCTCGA CCANGNCCAG GNCTNGTNCA 
    ACCCGTCCNG GCCNTTGNNC AANCGTNCCG CNNATGTTNA CCANGCATNN 
    NNNANCNNCN CNNNNNNNA

AT3G17910.1

Model type
Protein coding
Short Description
Surfeit locus 1 cytochrome c oxidase biogenesis protein
Curator Summary
Surfeit 1 (SURF1) mRNA. Similar to human SURF1 which is known to be involved in cytochrome c oxidase assembly.
Computational Description
SURFEIT 1 (SURF1); CONTAINS InterPro DOMAIN/s: Surfeit locus 1 (InterPro:IPR002994); BEST Arabidopsis thaliana protein match is: Surfeit locus 1 cytochrome c oxidase biogenesis protein (TAIR:AT1G48510.1); Has 1714 Blast hits to 1712 proteins in 488 species: Archae - 0; Bacteria - 777; Metazoa - 126; Fungi - 127; Plants - 43; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink).
Link
InterPro Scan - TAIR