1. Home
  2. Mutant Lines
  3. 54-3839-1

54-3839-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7043365 [Map]; Strand: w
      • AT1G20340.1 - [+] show detail - Cupredoxin superfamily protein
        Distance: -2; Region: promoter
      • AT1G20350.1 - [+] show detail - translocase inner membrane subunit 17-1
        Distance: -348; Region: promoter
    Flanking Genome Sequence: 54-3839-1 - 5-prime edge 
    NTTGANCAAA CTAACAAAAT CGGTTATACG ATAACGGTCG GTACGGGATT 
    TTCCCATCCT ACTTTCATCG TGAAAGAGAG AAAGTGAGAT AGGACAATGG 
    ATGGCTCTAA AAGCAAACTC CATAAAAAAA CAAGTTATCT ATAAAGACGC 
    GTTGTGATTG GTTGATTTTA GATACTGTGT CGTGACATGG CATTATGAGG 
    TGGAGGATGT TTGTCCACGT TTTAAATAAA GATAAGGTTC TTGAATGACG 
    TGGCGTTTTT ATATTAGTAT TTTGTGATAA AGCGTGTTTA CAAATGGGCC 
    TTAATGGGCT TTGACCATGG TCAAGTAACG TGAACAACAC GATATTTTTC 
    CATTTTTGTA ATTTTTCCTC ATTCTTAGTT TCGTTTTCAA GGGCTCTTTT 
    CTTATACCCT AAAAAGTTAC TTGTAGATCA AAATCGAAAA TCAATGGGAA 
    CTCCAGAATC ATCGAGAGAG CCATGTCCGG ATCGGATC

AT1G20340.1

Model type
Protein coding
Short Description
Cupredoxin superfamily protein
Curator Summary
recombination and DNA-damage resistance protein (DRT112) One of two Arabidopsis plastocyanin genes. Predominant form, expressed 10x higher than PETE1. PETE2 is thought to be post-transcriptionally regulated via copper accumulation and is involved in copper homeostasis.
Computational Description
DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112 (DRT112); FUNCTIONS IN: electron carrier activity, copper ion binding; INVOLVED IN: response to UV, response to chemical stimulus, copper ion homeostasis, negative regulation of translation, response to copper ion; LOCATED IN: thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Blue (type 1) copper protein (InterPro:IPR001235), Cupredoxin (InterPro:IPR008972), Plastocyanin (InterPro:IPR002387), Blue (type 1) copper domain (InterPro:IPR000923); BEST Arabidopsis thaliana protein match is: plastocyanin 1 (TAIR:AT1G76100.1); Has 1286 Blast hits to 1278 proteins in 235 species: Archae - 146; Bacteria - 416; Metazoa - 0; Fungi - 2; Plants - 206; Viruses - 5; Other Eukaryotes - 511 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G20350.1

Model type
Protein coding
Short Description
translocase inner membrane subunit 17-1
Curator Summary
mitochondrial inner membrane translocase
Computational Description
translocase inner membrane subunit 17-1 (TIM17-1); FUNCTIONS IN: protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity; INVOLVED IN: protein transport; LOCATED IN: mitochondrial inner membrane presequence translocase complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial inner membrane translocase complex, subunit Tim17/22 (InterPro:IPR003397); BEST Arabidopsis thaliana protein match is: translocase inner membrane subunit 17-2 (TAIR:AT2G37410.2); Has 784 Blast hits to 781 proteins in 207 species: Archae - 0; Bacteria - 0; Metazoa - 333; Fungi - 216; Plants - 165; Viruses - 0; Other Eukaryotes - 70 (source: NCBI BLink).
Link
InterPro Scan - TAIR