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Mutant Lines
54-3889-1

54-3889-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 26444426 [Map]; Strand: w
- AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
  Distance: 0; Region: exon1 (CDS)
- AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
  Distance: -660; Region: promoter
- AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
  Distance: -660; Region: promoter

CTCTCAACCA ACGACAACAG AAGAAGAAAA ACAATAACAC AAAGTGATCC 
TTTCAATAAA GACATACCCG GTTTCTCCAT TTTCCGATGG CAGAGTTTTC 
AGATGTTTTT CTTTCTTACA GGGTGTGGAG GAAACTTATA ACAAGAAAAT 
GGAGAGAGAG CAAAACAAGG GTCATAACAA AAGACCAAAT CCTTATCGTT 
TGTTTTTGCT CAGATCCGTC GGTCTTTGTT AGAGTCTCTC TATTGTTTTA 
CNTGTGACTA GATTGTCATT TCACCATATG TAATAATTAA TTAGGTTCTA 
CAATAATCTT ATTTTCCTAC AAATTTAATT AAAATCTTGA CCCTAAAATA 
GTACTTTATT AAATCTTTTT TTCTTCTACT TTGATGTCAA CATTAAAATT 
GAAGTTGATC TGTTTTGAGT TTTGACAATA GTCATTTACC TTTTCTTTAA 
TTTTATTTAA CAAATAGTTT TGGGAAAAAA TCTCCCTTTC TTTGATAATA 
CACAAATCAA TCAATATAGA GATAATTAAA CCACGTCTTT ACAGAGAATA 
GAAGCAAATC TTTGAGCTAG TAACATTTTA GTATAAAAAT CTCAACAACA 
AGTCATTTAC ATCATTGCAA CTGTTTTGTT TTCTTCATTT GACTTGGGGG 
GTTGTTTGCT TGCAAAGGAN GCTTTGTTTG TACGTCGTCG TTTTTATTCC 
GTATATAAAA TATATA

3 prime edge [+] show sequence

Chromosome: 5; Position: 26444310 [Map]; Strand: w
- AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
  Distance: 0; Region: exon1 (CDS)
- AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
  Distance: -776; Region: promoter
- AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
  Distance: -776; Region: promoter

GTTGAGAGCG TCAATGGCGG GGGATACGTG AAGTATGGAA CCGAAGCTAA 
AGTGGTTCCG GGGAAACTAA ATGTTCATCT TGTTCCGCAT TCGCATGACG 
ATGTCGGCTG GTTGAAAACT GTTGATCAGT ACTACGTAGG ATCTAACAAC 
AGAATCCAGG TATGTTATCT ACAGATGAAT GATGAATCAT ATATATGTAT 
GTATGTAGAG ACGAGTCTAA CATACTATAT ATCCCAAATG AATCGTGAGT 
TTCAGAACGC TTGCGTGAGG AACGTCCTAG ACTCGGTGGT GGATTCTCTA 
CTTCGTGATC CCAATAGAAA GTTTGTGTTT GCGGAAATGG TAAAACATTA 
ATAATGGTTT TGTTCATAAA ACCATAATAT ATGTTTTCTT CTCTTATGTG 
AACATCAATG TACATGAAAA AGGCCTTCTT TACGCGTTGG TGGGAAGAAC 
AAAGCCCCGA GAGACAAGAG CAAGTGAGGA GACTAGTGAA ATCCGGGCAA 
CTAGAGTTTG TGTAAGTAGG TCACGACCTT AATTTGATCA TTTTGGCTAC 
GTAGTGATGA TACAATTCAC ACAATCAATG TGCAGAAATG GGAGGATGGG 
CTATGAATGA TGAAGCAACG TGCCATTACA TAGATATGAT AGACCAAACC 
ACAAAGGGGC ATCGGTTTAT AAAGCAACAA TTCAACACAA CTCCACGTGC 
TGCTTGGCAA ATCGATCCCT TTGGT

AT5G66150.1

Model type: Protein coding
Short Description: Glycosyl hydrolase family 38 protein
Computational Description: Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66160.1

Model type: Protein coding
Short Description: receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary: Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description: receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G66160.2

Model type: Protein coding
Short Description: receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary: Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description: receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR