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54-3923-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2843349 [Map]; Strand: w
      • AT2G06925.1 - [+] show detail - Phospholipase A2 family protein
        Distance: -48; Region: promoter
    Flanking Genome Sequence: 54-3923-1 - 5-prime edge 
    GTTAGAAGAA GGTAGAAGAC GAATAGTCTG TGACTCTGTC TCTTTGTCTT 
    CTTATGTCTC GTGACTCATT TGTTTCGTAT GGCTAATAAT GTGATTTTCC 
    ATATTTCCCA CATACATAAA TATCTTGAAG ACTTGAACTA TCAAACAATA 
    TATAACATTT TTTTTTCTTT TCTTCACATA ATTAAACTAA TTATATCTCG 
    AACTACAATG CAATACAGCT CATGATCAAT TATTTTCTTT ATTTTTTCAA 
    CAATCAACAT TACTATAATA GTCTTTTTTG ATAATAACAC AATAAAGTTT 
    TATCAGACAA AATTGCTTAA CCGGGTTAAT TGGTAGGTAA AGGGCAATCA 
    TGAAGTGGAC AGTAGTATCT AATTAGGAAA CCTCGTTTGA TTAAATCAGA 
    TCACGGNGTA TATTTCTTTT TGGTTTTTCG TTAATGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 2843233 [Map]; Strand: w
      • AT2G06925.1 - [+] show detail - Phospholipase A2 family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-3923-1 - 3-prime edge 
    CTTCTAACTC ACTTCATTTT CACCAAAACC AACAAATATA TTCTTCTCAC 
    TTTCCGAGCT TTCCAGTTCA ACTATGGCGG CTCCGATCAT ACTTTTCTCT 
    TTCCTTTTAT TCTTCTCTGT CTCTGTCTCG GCACNTTAAC GTCGGTGTTC 
    AGCTCATACA TCCCTCCATT TCCTTGGTTA GTCAACTCTT AACCGGTCAT 
    GATCATTGAT ATATCTTTTT TGGTTTAGAT CCGGTTTATA CTGATAGGTC 
    ACTTGGTTTT GAATTGTCTT GGTAGACTAA AGAATGTAGC CGGAAATGTG 
    AATCAGAGTT TTGTTCAGGT GAACAATCTC TAACTCTAAG CT

AT2G06925.1

Model type
Protein coding
Short Description
Phospholipase A2 family protein
Curator Summary
Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine.
Computational Description
PLA2-ALPHA; FUNCTIONS IN: phospholipase A2 activity; INVOLVED IN: phospholipid metabolic process, lipid catabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipase A2 (InterPro:IPR016090), Phospholipase A2, active site (InterPro:IPR013090), Phospholipase A2, eukaryotic (InterPro:IPR001211); BEST Arabidopsis thaliana protein match is: Phospholipase A2 family protein (TAIR:AT4G29470.1); Has 123 Blast hits to 123 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 110; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR