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54-3955-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3368479 [Map]; Strand: c
      • AT3G10750.1 - [+] show detail - FBD domain family
        Distance: 210; Region: intergenic
      • AT3G10760.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -1101; Region: intergenic
    Flanking Genome Sequence: 54-3955-1 - 5-prime edge 
    GGGANAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCAA GAAGAATATT ATTATCATCT AAGAAATGGA 
    TTTTGAGGTT GGACCAGACA TGATAATATG ATGAATCTTT ACAAGGAACG 
    TAGTGGATCT TCTTCCGGCT GAATAGTGCT CATTTTTCAA TTTCTACATA 
    TATCGCATAT TGAGCAGAAG CTGCGATGAT GCTGAAACCC TATACATAGA 
    CTCTAACTCT TCCCTTATCT TCTTTTTCTC TTCAACATTC GTGAAAGGTA 
    TCAGTGAGAT TTCCACCGTC TTCAAAGACT TCAGAGTTTT CGAGGATGTA 
    AGCCAGAAGT TGTTTCTCTT CTCTCCTTCC TTCAAAGAGT TTCCACTCCA 
    AGATCTCAAG GTGAGACAAC ACGCATCGCG GTACAGAACT TGGTTGGTTC 
    CAAGAAAGTG GAACATGATC AATAAAAGGC TGAGAAGGAA GAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3368491 [Map]; Strand: c
      • AT3G10750.1 - [+] show detail - FBD domain family
        Distance: 222; Region: intergenic
      • AT3G10760.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -1089; Region: intergenic
    Flanking Genome Sequence: 54-3955-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
    ACGGCTAGCT AGCTGCTTGA TGGTAATTAA TATTCTCCTT CTCTATCTCG 
    CTAATTTGCT AGCTTACTAA TTGTTTTCAT GGTATTTTGC CAATTCTTCA 
    TTTTACGATT CTTATGATAT GCAGACGATT GATGGTCTGT CTTTTCATAA 
    ATAGATGCAC ATCTTCTAAG CAAGCAAATA TGTTTTGACT TTTGAGATAA 
    AGAATATCAA ATGACTTTGT TTTTGGTATC TTTACAAGGA ATGGATCAAT 
    AATCAGAGAG TTAATAACTT TTTCATTGTT GTTAAACCAA AAGATGATGA 
    TATTAATGAC TATTCTTTTT AATATGTTTT CAGTTTCATC AATTTTGAAT 
    ATTCATATTA TATCATTGAA TGTTCTTGTC TTTGCTTGCA AGCGAAACCA 
    AAACTGGGCC TTCAAATTTC TCTAAAAACA TAATTATTTA TTGACAATGA 
    CATGCTAACA GTATCACGCA TTTCTATACT ATGTTCTAAC TACATAAAAT 
    AGACTATAGA AGAAAACTGA ATAAAAGAAA TATGTTAAGC CAAGTATACA 
    CGTTTTTATT GCCAAAGATT GTTGATGTTA TTATGTTTCC AAAGTCCAAA 
    ATAACACACC GAGTCATCAT AACTTATACA CTGATCAACA TTAGTAAATC 
    ATTCTTCTCT TTATCTTGAT CAGTGTCTTA ATCAAAGATT AGTAGTAGAT 
    TTTAGTTTAT TAGAATACTT TNCATTTTG

AT3G10750.1

Model type
Protein coding
Short Description
FBD domain family
Computational Description
FBD domain family; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G05080.1); Has 846 Blast hits to 813 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 846; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G10760.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT5G05090.1); Has 1702 Blast hits to 1694 proteins in 80 species: Archae - 0; Bacteria - 3; Metazoa - 31; Fungi - 6; Plants - 1631; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Link
InterPro Scan - TAIR