Home
Mutant Lines
54-3963-1

54-3963-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 4158343 [Map]; Strand: c
- AT1G12244.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  Distance: 0; Region: intron2 (CDS)
- AT1G12250.1 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: -922; Region: promoter
- AT1G12250.2 - [+] show detail - Pentapeptide repeat-containing protein
  Distance: -922; Region: promoter

GNGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TTTCATCACC ATTTTCATCA CACTTCATCG ATATATAAAT 
GTGTGAGTGT GAGTGTGCTT CACCTCTCGG CGGCTTGAAT AGCGAGCCGT 
CCAGCAACAG AACGAATTTT GTTCGATTGA ATCGTCTCTT TCCCATCAGA 
AGATCTCGGC AACCCAATTA TAAATTCATC AGCCTCTTCT TCTTCAGCAA 
TTTCTAAAAG CCTGGTCTCG AGTTTTTGCC CTCTCGATTT CAAAACCTAA 
TAGTAATACC CAATTCATAT CAACTTCATT ACTGAATTTG AAAACGCAAC 
GAGGTCGAGA AATTTCGAAA GTTACCGTGA GAGGTTTAAC GGTGTAGCCT 
TTACTAATAG CGATTCCGGT TCGAGATACA CCTAAATCTA CGCCGAGACT 
GAACCCACCT CTCCAATTCC GGTCTATTTT CCGGCGAACA GCATTAGGAG 
GGATTTCGTC AATTGACGTC ACTGCCCTCA ACGGTAGAGG ATAATTACGA 
TATCCTATAG GAGATAAGCG ATGAACGAGA GAGGTATTTA CGTACTTTTG 
AGTTCTGAAT GAAATTGCTA CGGAAGAAAA AGAGTGAAGA GAACACATTG 
CTACAGAGAG CAAGAAGAAG ACGAACAGTA TTACAGTAGT TCGTTCCATC 
GCCAACACTT TTGTTTTGAC GATGAGCCAA AAAAAAGAAG CTCTGTTTCT 
CAAACCCTCT GCGCTAATCC GAAGGTTCTG ACT

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 4158358 [Map]; Strand: c
  - AT1G12244.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
    Distance: 0; Region: intron2 (CDS)
  - AT1G12250.1 - [+] show detail - Pentapeptide repeat-containing protein
    Distance: -907; Region: promoter
  - AT1G12250.2 - [+] show detail - Pentapeptide repeat-containing protein
    Distance: -907; Region: promoter
Flanking Genome Sequence: 54-3963-1 - 3-prime edge
```
ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
TTGCTTTGCA GGGGTTGGAG AGTTTATGTA TTTGATGAAC ATGGAACAAC 
GTCAGAAGCT TCAGATAGAA TGATTGTAAT GTTAGTTTCG TTTCTGAATC 
TCTCTCTGTT CTTAGTTTAG CAATTCTGGT TTTGATGTCT ATAAAGTTTT 
TCTTTTTATG TACATTGGTA TCTATCTATC AACAACCTTA AATCACTGAA 
CTTTCATGAA AATTTCGATT ACGGTGTGTC TGAATTAATG TTTGAGCATT 
ATGGTATTTC AGGGGACTTA GCAAGAGTGA AAGACAGAAC AGATCAGATG 
CATATGCTGC TGTGGTAAGG CGAACAGTAA ACAATCTCGA
```

AT1G12244.1

Model type: Protein coding
Short Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description: Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nucleic acid binding; INVOLVED IN: DNA repair, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, DNA recombination, response to DNA damage stimulus; LOCATED IN: endomembrane system, cytoplasm; CONTAINS InterPro DOMAIN/s: Resolvase, RNase H-like fold (InterPro:IPR006641), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Resolvase, holliday junction-type, YqgF-like (InterPro:IPR005227); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12250.1

Model type: Protein coding
Short Description: Pentapeptide repeat-containing protein
Computational Description: Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7687 Blast hits to 4280 proteins in 513 species: Archae - 134; Bacteria - 5724; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1589 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G12250.2

Model type: Protein coding
Short Description: Pentapeptide repeat-containing protein
Computational Description: Pentapeptide repeat-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide repeat (InterPro:IPR001646); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G44920.2); Has 7775 Blast hits to 4220 proteins in 505 species: Archae - 143; Bacteria - 5794; Metazoa - 1; Fungi - 0; Plants - 235; Viruses - 4; Other Eukaryotes - 1598 (source: NCBI BLink).
Link: InterPro Scan - TAIR