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54-4082-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2388272 [Map]; Strand: w
      • AT3G07470.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT3G07480.1 - [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
        Distance: -680; Region: promoter
    Flanking Genome Sequence: 54-4082-1 - 5-prime edge 
    CCTTTCGGGA ATATCCCCGA AGGTAATCCG TTTGCCAGGA GGATCTCGTA 
    TATAGTCTCA GTCTCTGATA TCGCCGTGGA GATCGAGATC CCGGCGACGA 
    GAACGAGACA TAGAAACGCG ATTTGAACAA TACGAAGCAT CATCGGCTTA 
    TTCTTCCCGA ATTCACGGTT TGTGATTTTG ACAGATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 2388156 [Map]; Strand: w
      • AT3G07470.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: 0; Region: exon1 (CDS)
      • AT3G07480.1 - [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
        Distance: -796; Region: promoter
    Flanking Genome Sequence: 54-4082-1 - 3-prime edge 
    CCGAAAGGTG TCAGAGAATT CACCTTCGAC GTCGAAACGG GACGATTCTC 
    GGTTTATTTG AATCAGGCAT GCGAGGCTAA ATACGAGACT GAGATACATT 
    ACGACGCCAA TATTACGGGG ACTATAGGTT CTGCTCAAAT CTCTGATTTG 
    TCTGGAATCT CGGCGCAAGA GCTATTCTTG TGGTTTCCGG TTAAAGGAAT 
    CCGAGTCGA

AT3G07470.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT3G07460.1); Has 638 Blast hits to 638 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 637; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G07480.1

Model type
Protein coding
Short Description
2Fe-2S ferredoxin-like superfamily protein
Computational Description
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1263 Blast hits to 1263 proteins in 213 species: Archae - 0; Bacteria - 293; Metazoa - 132; Fungi - 8; Plants - 41; Viruses - 0; Other Eukaryotes - 789 (source: NCBI BLink).
Link
InterPro Scan - TAIR