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54-4128-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26440210 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: exon20 (CDS)
    Flanking Genome Sequence: 54-4128-1 - 5-prime edge 
    CTNGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
    TCCCATCCTA CTTTCATCCC CTGCTATTGG CTCATTCACT TCGAGATGCC 
    AGTCTGTTCG GTTGTCCCGG ACCTGCAATA GAGTTTAATC TATTTGTTGA 
    AACCGGGCAA TACGATCTCA TTGGTGTTTA AAATACGAGA ACACAGAAAA 
    ATCTTAGGGT ACCCGTTTCA GAAAGTCTCT TCCATTAGAG TCAGTATAGA 
    ACTCCTTAGC TCTAGTCATA TCTGTTACCA TTCGCGTGAT AATCTCTTTT 
    CCTGTTAGAT GTCCCTTACC AACAGAAATT GGACCAATCT GCTAAAGAGA 
    ATGAGCTTGA GGGATCTTTT TATCCAAAAC ACCTTAAAGA ACCTGAAATA 
    GAGTTTTGGA CAACACTCAC AGTGAACTCA AATTCGGCGT GCTCTTTTTC 
    TTTGTATAGT CTTACCACCT AGATAACACA TGTACTTATC AACTAAGGAT 
    TCTCCAATAT AAATTGTCGT TGCAACTAGC TATGGTTGAC AATTTCTATG 
    GGATTAGAGT TACCACAAAA CGTGACTTAC CTGTGCCACC CAAGGACTAA 
    ACTGCTGGTG CACCTCATCT ATTAAAGGCC CTCGCACAAT CTGCAACTTT 
    GACTGCACGT TTCCATTGCC AATGAAAGCA GTAGTCACGG TACATATCTT 
    CCAAACAAAT ATTTACATGG ATTACTTTTA TCATATAGAT TTTATGGGTT 
    TATCTGTATT TCTAAACTAC AAAGACAATT AT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26440156 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: 0; Region: intron20 (CDS)
    Flanking Genome Sequence: 54-4128-1 - 3-prime edge 
    GAAACTACTA TCCGGTAAAC TATTTGATGT CCAGCAGAAA TTGCAAAACC 
    AAGAAAAATT TGGACNCNAT CCNNGGCCGA TGNCCACNCA NGCCTAACGC 
    ATTGTTAGTG TATTTTTTCA GCTTAATCTT GGAATGTACA TAAAAGACGA 
    GAAAGCANAG TTGTCGGTGT TGGTTGATCG GGCTACTGGG GGTGCAAGTA 
    TTAAGGACGG TGAAATAGAG TTGATGCTTC ACAGGTTCCA AATTTCATTA 
    GTGTCATTAG TCTGTATTTT TAAAACATGA AACATTATTG TGTAGTTGAC 
    ACTGATGAAA CATCCATGGG AACAGGAGAA CGTCCATGGA TGACTCGA

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR