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54-4208-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2063539 [Map]; Strand: c
      • AT5G06700.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-4208-1 - 5-prime edge
    GTGGGGAATG TGGTGTAGAG TTCGTGGCGC GTGACGAGTG GTTTTAGGGT 
    TGAGAGAGAG AGAGATGTAT GAAGAAAAAA AGAAAAGAAG ATGACTTTTT
    AAGAACAATG GAGAAAGGTG TTTCGTTAAC TGGACCATTT GTTTAGACGA
    CATTGTTAAG GGGATGACTT AAAGTGATGA GTTTCAAATT AAAATACCCC
    TCGTTTTTGG AGTTATTTAC TTAAAATGCC ACTTCAAAGA AGCGTGTCGG
    TGTGTTCGAG ATTCGAATTT TAATTACTGT CTTTTGCCCC TATCTATATA
    TATCTCACTT TAATCACACT TTTATTATCG TTAATGTTTA ATGTTTATTT
    ATGTTAATGA AGGATTAGTG GTTAGTGGTT GTGTTACTAA TTGTTCGTTG
    CTAATGTCCT TGAAAGGTGT AATTTGTATG ATCTATCTAA CTAAATTATC
    CGGAAATAAT GCGGTTGAAA TAAAATCACG ATACATATTA GGATATCACA
    ATCTATTTAT AATATATTTT AGTCGAGATT TGAAAATAAA AAGGGAATAT
    ATTACTCGAT TAAAGACATT TTCAAACGCA AAATCGTATA TAACTATAGA
    TTGAATCATA TATATATCTG TGACTCAAGT CTTTTATCTT TGTTTTTTGG
    GTTAATGTTA AAACCTTTAT AT
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 2063655 [Map]; Strand: c
      • AT5G06700.1 - [+] show detail - Plant protein of unknown function (DUF828)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4208-1 - 3-prime edge
    TTCCCCACTA CTAGTGACCA TCCACCTCTC CGTCTATGGC GTCAGACGCC 
    GTTAAGTATA TGCCAATCCA CGGCGGAGGA ACAACAGCAA CAACCGCCGC
    CGACATCAAG AGCTTCTTCT CCGCTCTAAA ACCCAAAAAA ACCTCAACTT
    TCGCTTACGC TTTCGTCATA ACCTTTGTCT CATTCACTCT CTTCTTTGCT
    TTTAGTCCTT CTCCAAACTC ATCTTCTCCT TGGTTCTCTA ACATCTTCAC
    TTCCTCCTCC ACAACCACAA CTTCAGACAA CACTTCCGGA TCTCAGTTCT
    CTTCAATTTT CTCATATATT CTTCCCAATG TCACTTCAAC CAAACCCACC
    AATAGATCCA GTGACGCCAC AGATTCTCTC TCTGTTAACG CCACTTCTCC
    ACCTCTCAAT TCGAATT

AT5G06700.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication). A tbr mutant is impaired in its ability to deposit secondary wall cellulose in specific cell types, most notably in trichomes.
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plant-type cell wall modification, pectin biosynthetic process, cellulose biosynthetic process, secondary cell wall biogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G12060.1); Has 18773 Blast hits to 6666 proteins in 584 species: Archae - 22; Bacteria - 3086; Metazoa - 4181; Fungi - 2776; Plants - 1414; Viruses - 506; Other Eukaryotes - 6788 (source: NCBI BLink).
Link
InterPro Scan - TAIR