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54-4249-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433349 [Map]; Strand: c
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -251; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -715; Region: promoter
    Flanking Genome Sequence: 54-4249-1 - 5-prime edge 
    CTCCCACTGT CGTCGAGGTT GATCTTGGTG ACCGGAGTTA TCCGATCTAT 
    ATCGGCGCCG GCTTGCTTGA TCACTCAGAA CTTCTTCAAA GGTTTCATCT 
    TTTGTCCCAT AAGACCATTT CATTTTAATT TAGTTTAGCT TTTTGAGCTT 
    TAATTGTCGC CACCATCAAA CGGTCGAGTT TTGACTTCTC TTTAAGCGAT 
    AGTATCGATT TAGTAAGGTG TTGATGTCGT TGGAGATGAC TAGTGAGCTT 
    ATTTAGGCCA ATGGTTTTTG TTTAAAAAAA TTTCAGAGCA CATACAATAC 
    TCAAGTTTTT TAGAGTTTGG TCTTGCATAA TTTGTTGATA AATGTTTAGG 
    CATGTTCACG GAAAGAGAGT GCTTGTGGTC ACCAATGATC GAGTTGCTCC 
    TCTCTACCTG GACAAGACTA TAGATGCTTT AACCAGAGGA AATCCAAACG 
    TGACAGTGGA AAGTGTAATT TTGCCTGATG GAGAGAAATA CAAGGACATG 
    GTACATGTTA TCTTGGATTT TGATTTCCCT GTTTATAATA AAGAATCATT 
    AGTAATCGTG AGTTATTGAG ACTCTTTTAT TCTTTCTAGG ATACTCTCAT 
    GAAAGTCTTC GACAAGGCCA TTGAGTCTCG CCTAGATAGA CGATGTACAT 
    TTGTTGCCCT TGGAGGCGGT GTGATAGGCG ATATGTGTGG ATATGCTGCT 
    G

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26433465 [Map]; Strand: c
      • AT5G66120.1 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: -367; Region: promoter
      • AT5G66120.2 - [+] show detail - 3-dehydroquinate synthase, putative
        Distance: 0; Region: exon1 (CDS)
      • AT5G66130.1 - [+] show detail - RADIATION SENSITIVE 17
        Distance: -599; Region: promoter
    Flanking Genome Sequence: 54-4249-1 - 3-prime edge 
    AGTGGGAGAA GAGATGGAGC GTTGATCGTT AAGCGGTTCG TTCATGAGCT 
    GGCTAGCACC GGCGCGCACA CGAGACCTGG AAAGAGTCGT GGAAGATAAA 
    GAAAGTTCCC CAGGTTTAGA CTTTGCAGAA GCCACAGGGA AAAAAATAGT 
    TGGTGGAGCA ATAAAGGCAC GGCTTTGAAA GGAGTTGAGA TTCTTGGAGG 
    CGGCGACGTT GGAAAGAGAA ATGGTGTTGG CTGCCATGGA AATCGATGCG 
    GATCAGAAGT CGGGTTTGGG GAGAAGAGAG AGTTGAAGAA AAGAAATTGG 
    GTTGGTGAAG AAGAAGAAGA CTGAATTGAA AAAATACATT AGAGGATTGA 
    TTTCGTGGTG TTGTTTGGTG AAGCCTTCGG AGACGGCGTG GGGTAGGTGG 
    TGGTCACTCT CTCAGGCCAT TGGTGTAATC TCCTACAACT CACCCTACGC 
    TAAAACAGGT TATTTATTTT ACTCACGTGA GATAGGCGGT CTAGATATTG 
    ACACGTCACG TAAAGACCTC ACTACTTGTC TTCTCATGTA CACCTCGGAT 
    AAAAACGATG CCGTTTGATT GACCCGCGAA AATATCGAGC GATGAAATAG 
    TCATTTAGTG GAGCGAGCCA ACACTCACTC CTCATTTCGA GACAAAAACG 
    CGGAAGGCGA CGACACGCCG TTGAGGAGGA TC

AT5G66120.1

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity, carbon-oxygen lyase activity, acting on phosphates; INVOLVED IN: aromatic amino acid family biosynthetic process, biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase (InterPro:IPR016303), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 8426 Blast hits to 8421 proteins in 2521 species: Archae - 162; Bacteria - 5225; Metazoa - 16; Fungi - 182; Plants - 46; Viruses - 2; Other Eukaryotes - 2793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66120.2

Model type
Protein coding
Short Description
3-dehydroquinate synthase, putative
Computational Description
3-dehydroquinate synthase, putative; FUNCTIONS IN: 3-dehydroquinate synthase activity; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: 3-dehydroquinate synthase AroB, subgroup (InterPro:IPR016037), 3-dehydroquinate synthase AroB (InterPro:IPR002658); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66130.1

Model type
Protein coding
Short Description
RADIATION SENSITIVE 17
Curator Summary
Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.
Computational Description
RADIATION SENSITIVE 17 (ATRAD17); INVOLVED IN: regulation of DNA repair; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G77620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR