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54-4260-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8349571 [Map]; Strand: c
      • AT1G23540.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4260-1 - 5-prime edge
    GGTGACNCAA CGNNCNACAC GTACAGCNTA NNCACANGTG CGNGGATNNC 
    CNGGNACTCT ACCAGGGGTA AGAAGATCTN TTCCAACCNG GCACCGGNCG
    ATCCNTCATA ACACNGGCCT GATTCAACCN CCTTCTCCGG CGCCACNGGA
    CAGTCAAACG AATCTCCTTC TCCTCCAGAG GATTCCGAAA CACCNCCAGN
    TTCACCAAAT GAATCCAATG ANAACAACCC TNCTNCGAAN CAAGATCACG
    NGCNTGGGCA GGCGAGCACT CGTGCNGNAN AGNGNGNNNN NAGGGAGGCG
    NATTACNNGN NNCCCNCCCC CCCCCCCNNN NNNGNNNNTN NNNNNNGGGG
    AG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 8349678 [Map]; Strand: c
      • AT1G23540.1 - [+] show detail - Protein kinase superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4260-1 - 3-prime edge
    CNGNNACCCG GNCGNNCGNA TAACNATCCC GNGCCGNNCN NCACAGCNTN 
    CNNTNTAACA GGTGGAAGAG CTGAGTTTTC GGATGGAGTC TCTGGTGGAG
    GAGCGGTATC AGCTGGTGGT GCTGGTGGTG AAGAACTCGG CGACTCGCCT
    AAGTCTGACA TTTTTTTTTT NTAAGGAAAA AACTANCTTA GTTTAATTNA
    ATTNAATGAT GGATTTTTTN TAAGGCAAAA ACTAGGGTTT ATAAAATTCC
    CAGGACCTTG AAAAACAAGG NGGANANANA GGAAAAAATG TNCANACTTT
    AATTTNTAAA GGTNTTTTNT TTTTCCNTNA AACTTTCNTT TTCCCAGGAA
    AAAATAAANT AAAANCNAAT NTANCAAAAA ATCNCCATGA TCATANATGA
    TGATGATGAT AATAGTCNAA GGCNCGTCGT CGCCGCCTCT GTTTTTTTTT
    TTTTNCCCNA ANAANTNGNT TTTTTGGGNA AAANNNCCNT TTTTTTTNGG
    NTTCCCNGGA AANTNNAANA AAATTTTTAA AAGTNNAAAG GNCCNTTTNN
    NNNNCCCCCC CGGGTNTTTT TTTTAAAAAA TTTTTTCCNN CNAAAGGNNG
    NAAATTTAAA GGGGCCTTTT TNAAGGNCTT TAAANTAAAN CCCTTTNCNN
    GGNAANNAGN GGNCCTTTTT TGGGGGGGGG NNCCTNNGNC CCNANTTTAA
    AATTTTTTTC TNAAAAAA

AT1G23540.1

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Curator Summary
Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
Computational Description
INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).
Link
InterPro Scan - TAIR