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54-4278-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26424818 [Map]; Strand: w
      • AT5G66080.1 - [+] show detail - Protein phosphatase 2C family protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66090.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloro...
        Distance: -918; Region: promoter
    Flanking Genome Sequence: 54-4278-1 - 5-prime edge 
    GNNTTNGACC CGCAGTCAAA ATCGGTTATA CGATAACGGT CGGTACGGGA 
    TTTTCCCATC CTACTTTCAN GTTAAAACAC ACACCACAAC CATCCGGATC 
    TGATCCTCGA GGAGGTTGTT GGCCTGGACA ACGGCCATGG AGAAATCACC 
    AAAAAGGTGG TGAGCAGAGT CTTTGTACCA GAGAAGGCCG TCTTGTTTGC 
    CTTTGGAATC AGAATAAGTG TGGGAAGTGG TGGAAGAAGA GGGCCAGAGA 
    CAAGAGGTCA AAAAGTTGAA GAAAAGGGAT AACATCGGGC CTCATCTCAT 
    ATCATCCCCA ACCACCGATT GTTATGCTAA AATGAATGAA TGAAGTATGT 
    TGAAAAAACA AAAGAAGAGA GAGTCGGAAA CTTCCATTCA TTCACTCACA 
    CAAAGAGGAG TTTTGTTTAG TAAAAAAAGC AACAGCTGGA TGGAGATCTC 
    AAGGAGATAT AGAGAAACTA TTAAGTTGTA AGTAACATGT GTGGAGAGAG 
    ATAGAGTGAA AGAAAAAAAG AAAAGACTCT CTCTGTTTTT GATTTCAGAT 
    ATTTATTAGG AACAGAACAG AGGAAGCCCT TTTCCTTGTA TATGAGAACA 
    GAGGAAAAGA AGAGAGACAA TTTATGGATC ACAAGATTTC CAGAGCCTCT 
    CTCTCTCTCT CTCAAATAAC TCTTTCTTCT ATATTTGACC ATCAAAGAAN 
    GGGACAAGAA GACACACATA CGTGTGCACG TGCACTTCCT TAACTCCTCC 
    CATGTGGGAT TTACAAACAT ACAATAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26365932 [Map]; Strand: c
      • AT5G65920.1 - [+] show detail - ARM repeat superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-4278-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAGAAT 
    TGGTTGTGGT GTGTGTTTCG GTGAGAAGGA AATTATTAAA GCAAAGAGAC 
    AAATTAAAAA AAGGGAACGT TTCTTTTGGT TTGGACCAAA GATTTTCTCT 
    TTTTCACTCT TTTTGCTGGG AAAAAACTAA AAAGCAGAGA AAAACCCAAA 
    AAAAAACACA GATTATGTTG ACCGAGATTT TTACAAGCTA TAGCCGGTTA 
    TCAACTCATC TCTCGACCCA TGCGCCACAC GTGGAAGCTC ANATCCTGAG 
    GTTAAATACC CATTTTGTCC TTGGCTTGAC CCATATGTAC CCATCTTTAG 
    CTAAAAAAAA ATTGAGGNGT TTTTTTTATA AATATTTTTA NACCAAATAA 
    TAAATCTTCA TATTGATTTT GNGTTCCATT GAAATATCAT GTTGCTTAAA 
    ANAGCACTCT NTTGGGTCTT CCCTTTAATT TTTGCTACTG AAATCGATGN 
    GTTGTCAAAA ACAATAAAGT NTTATNTCAG TAAATTAANA ANAAAAATAG 
    ATGAAGGGGG TNTTATGGTC TTTTANACGA TGAGCAAAGA AAATCCCGCA 
    CGTAAGTCAA AAAAGCTGCT AAGTAAACTA CAAATACCCA CGAGGACAGG 
    TTAGGGTCAC GTGCGACGTT CATTTCAAGG CCTAATTACT TCATTAACCT 
    TTTATTTGAA TCATCATTAT CATTGCTATA AACAATTCTC TNTTTTTTCA 
    AACAAAAATC TAAAAATCTC G

AT5G65920.1

Model type
Protein coding
Short Description
ARM repeat superfamily protein
Computational Description
ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: protein ubiquitination; LOCATED IN: ubiquitin ligase complex; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G49810.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66080.1

Model type
Protein coding
Short Description
Protein phosphatase 2C family protein
Computational Description
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT3G51370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66090.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR