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54-4380-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 12762115 [Map]; Strand: w
      • AT2G29940.1 - [+] show detail - pleiotropic drug resistance 3
        Distance: 0; Region: exon8 (CDS)
    Flanking Genome Sequence: 54-4380-1 - 5-prime edge 
    GTANTAANNA GANAAAAAAA AGNCNTTCGN TAACNGTCNG CCCNGGATTN 
    ANNCATCCTA CTATTCATCC CTNGNANGAN TCTANNCACN CNACNGTGCA 
    TNTCTNCCTG CTCCGCNCNC NGNTCACNNT CNNAGNNATC TGTNAACGNT 
    GNNTTGCTCT GTGACCTATA ANAAGGATCA NCGCCTNAAT ACTGGGCANA 
    TCCTCTCGAA GCCATATCAG TATCATTCCT GTCTCANTAC NTATCTNGNC 
    NNCANTCCNG ANCTCCTAAT ACTGGGCAAG CTGGNGATTC CAAGCTNGAT 
    GNCCCATTNG ACAAGAAATA NGCCCGATCC TTCTNNTTTA TGCAGAACAA 
    AATTTGCCAT TTCANGATGG GAAAACCTTA AAGTNTGCTC TGTGCGAGAA 
    NTANTATTGA TCATNCGGAA CANANTTCTT TACACTNTTA GGACATGCCA 
    CGTAAATCTC TACATCTATT NGCTGCANTT TGTAAATTTG GCNTCCTCTA 
    GAGNNTTGAC TCTTANGTCT AGNCCCCATG ACTTNGGTTT CGTNTNGCTT 
    TNAGATTGNC GGNGGCCGAG TAAATNTCGA ACNCTTNCCT TGNGCCTAGN 
    NCATNAANTN GCNGCTTGGN CTCNNTNNCT NGNNNTNCTT GNGNCGAGGC 
    TCNATTGNTN NTANANANGN ACCATTNNNG TGATACNCTT GGNCCTGCAN 
    TANTAAGGAN ANNNTGACCG NNGTTNTTCT TNAAATGNNC CNCANNANNA 
    AATCTCNTAA GAATNCGGTG CTTANACCCG TNCNGNGGNC CCNTTAAGAG 
    TTCGNAACGG NGGNACTNGC NNNAACCNCN ANGAGNAAAN AAAAAA

AT2G29940.1

Model type
Protein coding
Short Description
pleiotropic drug resistance 3
Computational Description
pleiotropic drug resistance 3 (PDR3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 12 (TAIR:AT1G15520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR