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54-4383-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23402036 [Map]; Strand: c
      • AT3G63360.1 - [+] show detail - defensin-related
        Distance: -445; Region: promoter
      • AT3G63370.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: -40; Region: promoter
    Flanking Genome Sequence: 54-4383-1 - 5-prime edge
    GTCTCATGTT AGTTACCGCG TATTCCATTT ATGTAGCCAT TGTCCAATCA 
    TCATCATCAT CGGTAAACCA TTGGTGTTCG TGTTTCCGAA TTATCTCTCT
    CGTTTTTTTC TTTTTCGGGT CAAGCT

AT3G63360.1

Model type
Protein coding
Short Description
defensin-related
Curator Summary
Encodes a defensin-like (DEFL) family protein.
Computational Description
defensin-related; INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Knottin (InterPro:IPR003614); Has 6 Blast hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G63370.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Curator Summary
Encodes a chloroplast RNA editing factor.
Computational Description
ORGANELLE TRANSCRIPT PROCESSING 86 (OTP86); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21300.1); Has 48148 Blast hits to 13528 proteins in 241 species: Archae - 0; Bacteria - 4; Metazoa - 44; Fungi - 62; Plants - 47536; Viruses - 0; Other Eukaryotes - 502 (source: NCBI BLink).
Link
InterPro Scan - TAIR