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54-4408-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26311553 [Map]; Strand: c
      • AT5G65770.3 - [+] show detail - little nuclei4
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65780.2 - [+] show detail - branched-chain amino acid aminotransferase 5 / branched-chain amino acid tran...
        Distance: 0; Region: exon1 (5UTR)
      • AT5G65770.1 - [+] show detail - little nuclei4
        Distance: -34; Region: promoter
      • AT5G65770.2 - [+] show detail - little nuclei4
        Distance: -34; Region: promoter
    Flanking Genome Sequence: 54-4408-1 - 5-prime edge 
    GTTATCGGAA ATCGCTCCGA ACGAGAAGAA GTTGCCATAG TCTCTCCCAA 
    TATCACAATT ACGGAGAATC TGAACCTAAA TTCCTCCGAT CTCCGATCAA 
    AAGCACGGTG CTTTGTCTCT TCACGTTTTT CTATTTCTCT CTCGCACAAC 
    AAAGAAGAAT TCTGTGACAG TGCGTTGTAG AGAGGTCTAG TCTCTCTCTT 
    CTTTTGTTTA NGTCGACGTT TTAGCTCAAA AGAGTTTTTA TTCGACCAGT 
    CAAAATGCCC AAACGACGGC AGTTTTATGC CTTTTCCTNC TCGTTTTTAG 
    CGGCCAATAC CAAAATTTTC AATTTAGTTT AAACGAGGTG ATTATATATG 
    GTAATTAAAA ATTTCGATTG TCTCANGAGT CACGACTGTA TGGTAACTTA 
    AATTTTAGAT TTTNTACTCA TAACCATTAA ATGTGTCATA CTTTNTTCTG 
    CCATAAAAAC NCANTGTGGA TGAAAATTAG ATTTTAGAAG ATATGANACT 
    TTAAAGATCC TTGACAGANT GTGTTTGGGG TGTATCAGCT CAGCCTCATA 
    AANNTTNATT CTGNACTTNT TTTGGNNGGN ATNTATTCCG NNNNNTAATT 
    NACCCAAAAG ACGANTGGGT TNNNCTNNGT NCAAAAGATT AAGTGATNAN 
    NGNNGAGTTN ACATANNTAC ATNGGNTTNN TTTANAANCA TGNGTANCNC 
    AATACAAAGG NANGAAGAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26311669 [Map]; Strand: c
      • AT5G65770.3 - [+] show detail - little nuclei4
        Distance: 0; Region: exon1 (CDS)
      • AT5G65780.2 - [+] show detail - branched-chain amino acid aminotransferase 5 / branched-chain amino acid tran...
        Distance: 0; Region: exon1 (CDS)
      • AT5G65770.1 - [+] show detail - little nuclei4
        Distance: 0; Region: exon1 (CDS)
      • AT5G65770.2 - [+] show detail - little nuclei4
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4408-1 - 3-prime edge 
    CCGATAACGC CGAGTACGGC GGCTACTAAT AGATTGACGA TTACGCCTAA 
    TTCTAGGGTT TTGAAAAGCC CTCTCACTGA AGAAATCATG TGGAAGCGGC 
    TCAAAGATGC TGGGTTTGAT GAACAATCGA TCAAGAATAG GGATAAAGCT 
    TGCCTTAATC GCTTACATCG CCAAGCTAGA ATCTGAGGTT TGCTTCTCGA 
    TTTTTCGTTG ATTTTCTCTT TCTCTAGTGT TATGAGCAGA GTACTCTAGG 
    CGGGAACACA ATGAAACTAA CTAATGAGAG TGTTATAATT ACTGGGATTA 
    GCTTGTGCCC TTGAAGTTTG ATTTTTCAGT TCATATGAAA TTGGTTTCTC 
    TTTCCGTTAC GCTCGTGGGT CAATCCTGAC AATTTTATAG GATGTAATTG 
    GTTTACTGCA GTTATTGCTT TGCTTTGGGA CCTTTAAAGT TTCGATTTTG 
    TTTCCTCTTA GGTTGAGATT GTTGTATGGG CTAGTTTATT CTCTTGCGTG 
    TTTTATCAGA AAAATCTATT GGCAGTGCTA TATTGATCTT AACTTTCATG 
    TAGGTTTATG ATTACCAACA CAACATGGGT CTTCTCCTTT TGGAGAAAAA 
    CGAATTGTCT TCGAAGTATG AAGAGATTAA GGCCTNTGTG GATGAGTCTG 
    ACCTAACACA TATGCGAGAG AAATCAGCAT ATGTCTCGGC TCTAGCTGAA 
    GCAAAGAACC G

AT5G65770.1

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 212892 Blast hits to 104310 proteins in 3685 species: Archae - 2813; Bacteria - 44601; Metazoa - 88597; Fungi - 16519; Plants - 11430; Viruses - 898; Other Eukaryotes - 48034 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65770.2

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 215167 Blast hits to 102614 proteins in 3709 species: Archae - 2940; Bacteria - 43360; Metazoa - 90724; Fungi - 17442; Plants - 11239; Viruses - 934; Other Eukaryotes - 48528 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G65770.3

Model type
Protein coding
Short Description
little nuclei4
Computational Description
LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2).
Link
InterPro Scan - TAIR

AT5G65780.2

Model type
Protein coding
Short Description
branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5)
Curator Summary
encodes a chloroplast branched-chain amino acid aminotransferase, can complement the yeast leu/iso-leu/val auxotrophy mutant
Computational Description
ATBCAT-5; FUNCTIONS IN: branched-chain-amino-acid transaminase activity, catalytic activity; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei4 (TAIR:AT5G65770.3).
Link
InterPro Scan - TAIR