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54-4474-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 20725497 [Map]; Strand: w
      • AT3G55850.1 - [+] show detail - Amidohydrolase family
        Distance: 0; Region: exon1 (5UTR)
      • AT3G55850.2 - [+] show detail - Amidohydrolase family
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-4474-1 - 3-prime edge 
    CACTTCGTCA TACTGTAGTT GTTGTTGTTT CTGTTTTAAG AATTTCTCCG 
    GCGACTGACT ATGAACCTCT TCGTCATCGT TTCAGCTGCC GTGTTCCTCC 
    TTATCTCCGT CGCAGTATCT TCCTTTGCTC AACGACTTAT GTAAGTTCGC 
    CTTCCAGGGT TGTCACACTT TTTTCTCAAA TCAGATAGTT TGACTGAAAG 
    TCGTCGATAC GATTGATGTT CGCAGATTGG TCAACTCTCA AGTCTCTTAC 
    ACCACCGGCT GGTATCGTGG CGGATTTGTT AGTGACCAAT GGAACAATCT 
    TCACCAGCGA TAGCTCTTTG CCTTTTGCCG ATTCCATGGC GATTCGTAAT 
    GGCAGGATTC TTAAAGTTGG AAGCT

AT3G55850.1

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.
Computational Description
LAF3 ISOFORM 2 (LAF3 ISF2); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G55850.2

Model type
Protein coding
Short Description
Amidohydrolase family
Curator Summary
Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids.
Computational Description
LONG AFTER FAR-RED 3 (LAF3); FUNCTIONS IN: hydrolase activity, hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds; INVOLVED IN: biological_process unknown; LOCATED IN: perinuclear region of cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amidohydrolase 3 (InterPro:IPR013108), Metal-dependent hydrolase, composite domain (InterPro:IPR011059); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR