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54-4482-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26449123 [Map]; Strand: w
      • AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: intron1 (CDS)
      • AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-4482-1 - 5-prime edge
    CACGTTATGT AAGGTAACTT GAGACCCCTC CTTTGCTTTT CTCAAAATTT 
    CTGAATTTGG CATTGAAACC GGAGAGGTCC GTTTGAAGGT TGAAACCTGG
    ATTCGAGGAT GCNTTTCGAA GAGATTGAAT CCGAAATTAA CTTGTAAACT
    GGAGAAGGTG AATTGGTTAC CAGGATTTTA CTCCATCCCT CCAGATGTTC
    ATATAGCCAG AACCAAGGCC TATCAGCAAG GCATGGTGAG AGAGAGCAAT
    CAAATACCAA CTCTCCTCTC GCTCATTCGG TTTTTCTTAA CCTTACTTGT
    TCTTTCTTCG GGTTTCAGAT GTACGGAATC GATGCAGCTT CCGGTGCCGC
    TGTCTCAGCT CTTGGTATCT CCCCAGGAGA CCATGTCTTG GATCTTTGTG
    CTGCTCCTGG TATTTTTTTA CATTGATCAG CTGATTTGGT TTCCTTAGTG
    TGTCAATTCG TCCTTGTAAC TGCTTTAGAG GGAATAATAA TACTCTCAGG
    TGCTAAACTA TGTATGATGC TTGACCTACT GGGTCAGAAG GGTACTGCCA
    CCGGTGTCGA TGTTGCAAGG CATCGTCTTG CTGCCTGCAG AACTATGCTT
    CTAAAGTATG GGCTTGCTGA AAGGAGCCGG CTTTTTCTTG CTGATGGAAC
    CACTTTCTCA GTCCCACCAA CCAGAAACCT ACCATGTAGA GCAGCAACAC
    TTCAACATCG
  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26449007 [Map]; Strand: w
      • AT5G66180.1 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66180.2 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G66180.3 - [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 54-4482-1 - 3-prime edge
    ATAACGTGGA ATTGAATCTC CGTGAGTATA GATTGAAGGA TCAAGGCCAT 
    TCGCCTCTAG GAAGCTAAGG AAACTCTCCG GTAACTGTAG CTTGGACAGT
    TTCTTCCATG AGAAACCCGA GAGAGAGAGA GAAGTGTTCT GGTCGGAAAA
    TTAATTAAGT CGGAGAATCG CCGGGCGAGA ACAGAGAAGA TAAGGGCTTA
    GGCTGAAGCC CAAAGCCTTT TTGTATGTAT ACTCAAAAAG CCCAAACGTT
    TTGACCGATG AAACAAACAA AGGCTTGTTA CTTAGTTTTT ACACTTTTAC
    TTGTTCATCT TTTTTTTTTN GGTTTNNNCT NNTNAAAAAN CNCAGTTTTT
    NTNGANTTGG GACCNCAAAA NTTTTNNTTN CAAAAAACNG NATTTTTAAN
    TNGAAANNGA TNNCTNCNTN NCNCGGGCGG TTNTTTTNTT NNNTNAAAAA
    AAAAAAAAAN TTTTAAAATT NTTANTTANC ANAGGGCNCC NCCNCCTCCT
    TGTGNAGGGN AAAGNTGTNN TCCNCCCAAC CNANNTACCC NCCTCCCACN
    TTTTTNANTT TTTTGTANCC CTATTTTTTT ATGTNTNTAT NANTGGATTN
    TTGGAAATNA AACNCACAAG TGGGGGGTAA ATTNTNTTTN TAANCTNGGG
    GANTNTTTTN CCCTTACTGA AANAANAAGT TAAGTTGGGG NTTTAAAGGT
    TCNGGCNCCA CTNTGACAAC CCNGTTTNT

AT5G66180.1

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8827 Blast hits to 7075 proteins in 2181 species: Archae - 455; Bacteria - 6424; Metazoa - 542; Fungi - 251; Plants - 202; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.2

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 2637 Blast hits to 2540 proteins in 1031 species: Archae - 209; Bacteria - 1812; Metazoa - 180; Fungi - 59; Plants - 92; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66180.3

Model type
Protein coding
Short Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Computational Description
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p (InterPro:IPR001678); Has 8458 Blast hits to 6982 proteins in 2152 species: Archae - 444; Bacteria - 6084; Metazoa - 538; Fungi - 249; Plants - 190; Viruses - 0; Other Eukaryotes - 953 (source: NCBI BLink).
Link
InterPro Scan - TAIR