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54-4525-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1975752 [Map]; Strand: c
      • AT4G04120.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 54-4525-1 - 5-prime edge 
    CCTTTGTTGG CTTTGATAGT AGTGTAGGCA GCATCACTGA GGACTTGGTC 
    AAAAGGGATT TGGGCGAGCT CAAGTACTTT AAAAACATTC GAAGAGTTAA 
    GAGATGTTAG AAGCTCGTTT CTGCATAGGT CGCGTAGATA TGGAATCTCA 
    TATTTGTCGG CTGCATGATA GCTGCATCCT TATCACTGTC CCATGCCTCT 
    AGCCGTACAT CGGCTGGTTG TTCTTTTATA ACCTTCAGTA ATCTATCAAT 
    GAAAATATAT TTGTTTGTTT GTGTCCCCAT AGCTATATCG TATAACTTGG 
    TTAGTTGGTT CTAATGTAGA AAACGAATGT AGCTTATACA TATATAGAGA 
    GAGCCTAGAC GGTCAAAATT ACTCTTTACT TTTACTTTCG TTTTCCAAGA 
    CGTTTTTGGA AATAAAATGA GACATAAATC AATATACGAA AATTCTTAAA 
    TTATTATCTC TCTTCTATTG ATAATTATAT TAAACAAAAC ATAAGTATTA 
    GCAAAGTGGG AAAAAAAGGA CTAATTATCA TGTTTCATCT CAAAGAGAGT 
    AATTATCTCT TTAGGTTTAC ATAAGCATTG AACTCGATCG TCTGATTTCA 
    ACACCTTTTA AAAGACTTTG GGTGCCTATT CAAATTTCCA TTAAATACCA 
    CTAACGATAA AAAGCATTTT ACTCTCAAAT CCATTGCTAA ATTGTTTAG

AT4G04120.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 3.8e-19 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR