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54-4552-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4542614 [Map]; Strand: c
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4552-1 - 5-prime edge 
    GTCGTAGGCA CGAGCGGCTT CGTCTTCTTC GTTGAATGTC CCGAGCCACA 
    CGCGCTGGTG TTTCTCGTAA ATCTGAGCTC CCCATCTTCC GTTTGGTTGT 
    GGCACCACAC CTTTGTATTT TGACGACGGA AGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 4542730 [Map]; Strand: c
      • AT1G13260.1 - [+] show detail - related to ABI3/VP1 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4552-1 - 3-prime edge 
    CCTACGACGT CGCGGTTCAC AGGTTCCGTG GCCGTGACGC CGTCACAAAT 
    TTCAAAGACG TGAAGATGGA CGAAGACGAG GTCGATTTCT TGAATT

AT1G13260.1

Model type
Protein coding
Short Description
related to ABI3/VP1 1
Curator Summary
Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator.
Computational Description
related to ABI3/VP1 1 (RAV1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Transcriptional factor B3 (InterPro:IPR003340), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene response DNA binding factor 3 (TAIR:AT3G25730.1); Has 6277 Blast hits to 6015 proteins in 258 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 6251; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
Link
InterPro Scan - TAIR