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54-4576-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 12908328 [Map]; Strand: c
      • AT5G34540.1 - [+] show detail - transposable element gene
        Distance: -788; Region: promoter
    Flanking Genome Sequence: 54-4576-1 - 5-prime edge
    AGCATCAGCA CCACCGGAAT TCTGAAGGCA NACCATTGCC TTATNGATNC 
    TGTACTCGTT CTTCTAATTT TTAACAGCCC CTGTTTGATG TTTCTCAATG
    CCTGTTCTGA ATCAATCTTC ACCATAAGGG AACAAAAGAG GATATTGTAG
    AGGAAGATAA CACGGGAGAA TTTCACTAAT TCTTTGTAGT TTCCCTGATT
    TCTCTTCTAC TACTATATCT CTGCATGGCA TATTTATAGT GAAGTCTCCA
    GGAATCAACA TGGCTACCTC TGATGCCGTA GGTACATTAT ACACCTTGCC
    ATCCGCTTCC CGTTTACTAA CTATTCTCAT ATGCAAAGTC TGTTCTGGAT
    TAGCATTGAA CCTGTCCCTA GCAGTCCGTA AGTGTGATAC GTAAGGGTTG
    ACACTATTTA GCAATTTGAT CACAACATCA ATAATTTCCT TTCTCAACTC
    TTTCTTTTTA TACTTGTCAG CATTAGCACC ATTACTGATA AGAATCAAAT
    AAGTCAAATT TAGAACAGTA ACCAATATTA AAACAACATC AATGTTATAT
    AAAAAAACAT TAGTAACACT ATAAGGAATG TAGTCACCTG AGTGCTTCCG
    ATCTGNTATC AACTTCATTC TCTGTGTCTA CAATATATAA CTGCATGAAC
    TTTGGGAGGT ATATCATTGT CTGGTCTCAA ACTTCCCTAT CCTATGGTAG
    TTCTCTCCGG
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 17191304 [Map]; Strand: w
      • AT2G41225.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4576-1 - 3-prime edge
    CTGATGCTAA TGCTTATTTA CTTAGCCATT TATTATCCAC CTCATCAAGC 
    TCATTTTCTC TCTTCATCTT CCTTTGACAC TACTTCTAGG CATGTAATGT
    GATGGTAGTG AGACAATGAG TCGATGATCC AGATGACTCA NCGTCACATA
    TGTGAATGCN GTCGTCGTTT GATGATAATT GNGAATCCAT GCAGTTTCTA
    TATGATTAAA ATTTAGACCC TTTTTATGTN TTTTCTTTTC TTTTCGTTTT
    AGGGTGATTC GAGTTGGATC GTCTGGTAAG AGTCATTGTA AAATTNGAAG
    TGTAATTTCT AATTTTCTAA TCANCANGAA CCAATNCCGA TTGATCATTT
    AATTAAGCAT ACAGATATCA NATATATNAT ATCATCANGA TTCATGCCAT
    ATATTATTTT CCAGTACTCA GATGATCATA GATTCGAGTT TCTACATTTN
    ACTCTGAAAA TAGGGGCGAG CNTGACCCCT TTTATTATTT TGNATTTTAC
    TNGTNCCCGT AACGTCACTN ANANNNTAAG GGAATCAGTN TNNNGCNTTA
    ANGTCGCNCG AATNNNTTTT GGNANATTCN TTANGAAANN ACGNGGAAAC
    CGNANCNGGN NATTANNNGN NGNNGGNAGN NAAGANAGCG NGAAACNNTN
    NGTGNAANAN NAGTGGGGGG GTNCAANNAN AAAAAANNNN NNCCCCCTTN
    NNCNNNNGNN TTCGGANGNC TGNCATAACG NAGCNNANAA NAANNGGGNG
    AANGCGNGGG GGCCNCCNC

AT2G41225.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G34540.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05080.1); similar to hypothetical protein 31.t00030 [Brassica oleracea] (GB:ABD65117.1); contains domain HELICASE-RELATED (PTHR10492)
Link
InterPro Scan - TAIR