1. Home
  2. Mutant Lines
  3. 54-4604-1

54-4604-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24588788 [Map]; Strand: w
      • AT5G61130.1 - [+] show detail - plasmodesmata callose-binding protein 1
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 54-4604-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCAAT TTGACTGCAT AGTTGCAATG AGACCTAACA 
    TTGTCAGGGT TGAAGCAAGA TTGTTTTGGT TTAGTAGGAT TACAATCTGC 
    TCCATTTCCA CAAGCATAGT CTAGGGTTGC CTGTAGCACT GTATCACTCA 
    GCCCTGTCTT ACACACACAC CATGAGGCAC CTACAAAGAC CACAAGAAAG 
    CCAAAATTAG AAAATAGATA GCTGCATCTT CCTTGTTCTA TAATGTGAGA 
    AGCCAACAAG ATTTGGGTAA ATCTTGGAAT CACCTTTAAA AGGCAAGATT 
    TACAAATATT AGGGTAAAAA AAGTAAGTAG GAAGTTGAGA GACAACAAGC 
    AAATCAGAAG AAGAAAAAAA TCAGTAAAGT TTTCTAGAAA TTTGTGAACT 
    ATGCCAAGAA AAAACACTTT AAGAACAGAA AACAATTTTT TATTTTTTCA 
    TTCTTCAAAG GAACAGAACC TTTTTCAGAC AAGAGCTAAC TAAGAGTGAA 
    AGAGATAAGA AGACTAAGCT AAGAAATCTG AAGAAGAGTG AAAGTTCTTA 
    CTAGAATGTC CAGCCAAGGA TAGAAGGAGA AGTGAAAGCA CCAGAGCAGC 
    CATAGATGCG TTCAGACAAA ATGTCACTGN TGNCTTTCTA GAAACAGAGA 
    GAGANANAAT GGAGATNGAG AGATCTCTNN AGCCAGAAGA ANAANAANAA 
    NANAANNNGG NNAGACCCNN NGAGAGATNG AA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 24573849 [Map]; Strand: c
      • AT5G61070.1 - [+] show detail - histone deacetylase of the RPD3/HDA1 superfamily 18
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-4604-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT ACCGACCGTT TTCATCCAAA 
    CACCTATATA GGATAAAATC AGCAGAATCT TTCCAATCTA TGAATTACAC 
    AATTCAGATT GAGAAAGTCA AACGTCAAGT CAAATAAGGA AAAACAAAAC 
    GAGACCTGTT TTCTCAGCGG AGATAATCAT CAAAACACCC AATTAGCCTA 
    AAATTTCAGC CTTTTCTAGG GCTTTATCGC CCAAAAAAGA CAACAAAGGC 
    GCACGAGAAG AGGAAAGTAT GAACCTTTGA GTGACTCCGG CGAGCTGAAG 
    CT

AT5G61070.1

Model type
Protein coding
Short Description
histone deacetylase of the RPD3/HDA1 superfamily 18
Curator Summary
Encodes a protein with similarity to histone deacetylases, a class of chromatin remodeling factors which act on H3/H4 histones. Expressed in roots where it appears to regulate the expression of epidermal cell fate genes controlling hair cell differentiation.
Computational Description
histone deacetylase of the RPD3/HDA1 superfamily 18 (HDA18); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G61130.1

Model type
Protein coding
Short Description
plasmodesmata callose-binding protein 1
Curator Summary
Encodes a plasmodesmatal localized protein with callose binding activity. The function of PDCB1 is unknown but overexpression leads to the hyperaccumulation of callose.
Computational Description
plasmodesmata callose-binding protein 1 (PDCB1); FUNCTIONS IN: callose binding, polysaccharide binding; INVOLVED IN: callose deposition in cell wall; LOCATED IN: plasmodesma, anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: glucan endo-1,3-beta-glucosidase-like protein 3 (TAIR:AT5G08000.1); Has 2214 Blast hits to 2014 proteins in 207 species: Archae - 0; Bacteria - 106; Metazoa - 136; Fungi - 241; Plants - 1436; Viruses - 12; Other Eukaryotes - 283 (source: NCBI BLink).
Link
InterPro Scan - TAIR