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54-4609-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 38903 [Map]; Strand: c
      • AT5G01100.1 - [+] show detail - O-fucosyltransferase family protein
        Distance: -955; Region: promoter
    Flanking Genome Sequence: 54-4609-1 - 5-prime edge 
    GCTATTCAAT TATTAGATAC TGTATAAAAT TTTCAATAGG TTTAATATAT 
    CACTAAACCC AACAAAAGAA TAAAAATAGT TATGTCGTTA TGATTTGGTC 
    ATATGGAAAT AGTAATTTAT TTATATAGTT ATAGTACAGA ATATTAATGT 
    AAATTATGTA AGGATCTTAT TTAGGTTATC GCAATAATTA TATTTCACTG 
    AATCTTAGGT ATCTATCAAG TATCAATAAC AGAGTTGTCA GTTTAAATGA 
    AAACTGTTTG TTAGTTGAAT AAGTTAAATA TCAAATGTAA AAAAAAAAAA 
    AANNGNGGGA AAAGGGNNAA NAAAAAAAAA AANTTTNNTT TNCCNNAAAA 
    AAAAAAAAAA AAAANTTTTN NAAAAANNAN NNNCCCNTTT TTTTNGGGNN 
    NNCCNNNNAG GGNNNAANNN NNNNNNTTTT TTTNAAAAAA AAAANCCNNN 
    TTTNAAANCN TTTTNCNAAA NNNGGGNTTT AAAAAAANNN AAANTTTTTN 
    TTGNNCAANT TTNGGGCTTT NAAAANCCCC NNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 38986 [Map]; Strand: c
      • AT5G01100.1 - [+] show detail - O-fucosyltransferase family protein
        Distance: -1038; Region: intergenic
      • AT5G01110.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 2782; Region: intergenic
    Flanking Genome Sequence: 54-4609-1 - 3-prime edge 
    GAAAACGGTA GAGGTATTTT ACCGACCGTT TTCAGAATAG CAGTAGTTGT 
    GATGTGGTTT GCTATTTAAA AAGAAATGTA ATTCTAGCAG CNCTCATCAG 
    TACGTAGTTA TAAACAGAGG GTTATTCTGA AGTATTCAAA GTCCTTCCAA 
    ATTAAGTATG GATTTTAATG CATCAGATTG AGATATGTAT GTCAACNTTT 
    CCTTTTTTAG ATTTAAGTGT TTTAACCAAC CAATACTTAC TAGACTAGTT 
    TACNTANAGA CTGACCAATT CCATTAATAA TACTAGCTTA TACATAAAAA 
    TAGCAAGTGT GTTTATCATG CAATCAATTT TCCTTATTTC TCAATGTTAT 
    AGAATCCTAA AAAGAAGGCA GNNTAAATAA ACTCAGTNGC TACTAGCAAT 
    TTAATTCTAN TTACTTTATT CAACCANTTA AG

AT5G01100.1

Model type
Protein coding
Short Description
O-fucosyltransferase family protein
Computational Description
O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G54100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01110.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G05670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR