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Mutant Lines
54-4668-1

54-4668-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 4; Position: 17910075 [Map]; Strand: c
- AT4G38180.1 - [+] show detail - FAR1-related sequence 5
  Distance: -398; Region: promoter
- AT4G38190.1 - [+] show detail - cellulose synthase like D4
  Distance: 0; Region: exon3 (3UTR)

CCTGCAGCTG CTGCAGAGGG TGTTGGAGGC GGTGGTTTTC AATTCCCGTA 
ATTAAAAAAG CATTCATATA GGCGACTTGA GAGTTTTGTA GACTAATCAC 
AAGAAATTAA TACAGTATAC TATCTTTGTT TCTTTTTGTT TTTGTTTTTG 
TTCCTGGTAG TAAATTTTCA GATAACTACA TGTATATCTG GATTGAGATG 
TCATGACTGT ATAAATCAGC CTTTGTATCA ATCATTTCGT CTTTAAAAGT 
CAATTTTTCC TCTCCTCCAC TCGCAACTGA TAGTGAACCA TACGGTAAGC 
GTAAAAGAGG ATGGGCCTTA TAAAGTAAAT GAAGAGGGAG TGGGCCTTAT 
AAAATTATAA ATGAAGAAGG AATGGGCCTT ATAAAATAAA TGAAGAAGGA 
ATGGGCCTTG CTTAAATTAA AAAAAGAGAA TTAGAAGCAC CGTCTGTCTT 
CCTCCTCCGT GCCCTCCGAC GACTCTATTC CCAGTCTCCC TCCTCCGTCG 
TCTCTCATCT TCCTTTTCAT TCTTCGGTTA TTATAACCGT AATCAATTAC 
AAGTTCCCTT ATCTCTTCTT TTCTGGTTTC TCCCGCGCAC GAACGCGCAT 
TCCCTCGTCT TCGCTGCCTC CCAATCTCAA TCTCAGACTT GAAATCAAAT 
CACGACTGTA AGTGGTTCTA TCTACAGTAG CTAGCTATTT CATNCTGTTG 
NNGACAATAN ATAAA

3 prime edge [+] show sequence

Chromosome: 4; Position: 17910191 [Map]; Strand: c
- AT4G38180.1 - [+] show detail - FAR1-related sequence 5
  Distance: -514; Region: promoter
- AT4G38190.1 - [+] show detail - cellulose synthase like D4
  Distance: 0; Region: exon3 (CDS)

GCTGCAGGTC CGGTGTTTGG GTTTATGGCC GTCCACAGTA GAGAGATGGT 
GATGGCAATG AGACCTGCCC ACACAAAAAC TATGGTTGGA GTTTTGCCTC 
TTCGTCCCAT CAATCCTTTT GCAAATGGAT ACAAATGCGC CAACACCCAG 
AAGCNTGAAA AATGCTCCTC CGATTAGCTT GCTCCATTGT GGCACCGCTT 
GGTATATTGT CCTGATGAAC GCCACCACAA TCGCTATTAT GTTCACCATT 
GCTATCACTA TAGGCGGTAT CATCAGCGAC GACCATTTCA CTATGTACAA 
ATCCGCGTAT ATGTCTTCAT TGTCATCTCC CCCTGACTTG GTCGTCAAGG 
TAAAGGAGAT CTCGATCCCT GCAATCACTT TGAGGACTCC TTGGACCACT 
GCGTAAAGGT GAGAGCTTGT TCCTGAGATG AGCCACCACT GTTCGTTTCT 
CCACCATTCT TCCAGCCCAA TGCCAGACCA CTTGACCTCC AAAACCGCCA 
AGCCAATCAA ACAAATGGTG ATCATAAGAA GGTAGACCAA GAAGGAGATA 
CTGAGCGTCC GCACGATGAA CTGTCCAGAG AAAAGAGAGA ATGCCGGAAG 
AAAACAATAG AGGATGAGAA ACAGAGACGT GAAAGGGTAT ATCCCAACAT 
TGAGGTATGC GAGACGTTGG ANGAACTTGA GACGTTTGGA GGCGAGAATG 
GCGTTGTTTC TAGAGAAGAA GATCTCAACA GACCCAGTG

AT4G38180.1

Model type: Protein coding
Short Description: FAR1-related sequence 5
Computational Description: FAR1-related sequence 5 (FRS5); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 3 (TAIR:AT2G27110.2); Has 1793 Blast hits to 1580 proteins in 47 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 136; Plants - 1646; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G38190.1

Model type: Protein coding
Short Description: cellulose synthase like D4
Curator Summary: encodes a gene similar to cellulose synthase
Computational Description: cellulose synthase like D4 (CSLD4); CONTAINS InterPro DOMAIN/s: Cellulose synthase (InterPro:IPR005150); BEST Arabidopsis thaliana protein match is: cellulose synthase-like D3 (TAIR:AT3G03050.1); Has 3503 Blast hits to 2866 proteins in 674 species: Archae - 22; Bacteria - 1611; Metazoa - 5; Fungi - 10; Plants - 1761; Viruses - 2; Other Eukaryotes - 92 (source: NCBI BLink).
Link: InterPro Scan - TAIR