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54-4672-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26445335 [Map]; Strand: w
      • AT5G66150.1 - [+] show detail - Glycosyl hydrolase family 38 protein
        Distance: -901; Region: promoter
      • AT5G66160.1 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
      • AT5G66160.2 - [+] show detail - receptor homology region transmembrane domain ring H2 motif protein 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 54-4672-1 - 5-prime edge 
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCATT TTCTCCCCCT CTTCCTTTTT CCTTATCCGA 
    AACAATTTCT CGAACAATCT GGTTAAAAAG AAGTTGATTT TGATTCTCAG 
    ACGGCTCCGT GACCAAAAAC GGAATCTGTG GAGCTCTATA CGTCGCAGAT 
    CCTCTCGACG GTTGCTCACC GCTTCTCCAC GCCGCCGCAT CCAACTGGAC 
    GCAACACAGA ACTACTAAGT TCGCTTTGAT AATCAGAGGC GAATGTTCTT 
    TTGAGGATAA GCTGCTCAAT GCCCAGAACT CAGGTTTTCA AGCTGTGATT 
    GTCTATGACA ACATTGACAA CGAAGATCTC ATCGTCAGTA AGCCTTTTGC 
    CTCCCACCCA AGTTTAAAAT TCCATCTTTT CTTCTCCTGA TGAGCTAGGG 
    TTGAGCTGAA TTTCATTGGA GTTATTTAAT TTAGTCAACG CCCCCATAAG 
    TTTGGAGATT GACCAACATC TGTTTTGCAC AGTGAAGGTG AACCCTCAGG 
    ACATTACAGT TGATGCAGTC TTCGTTTCAA ATGTCGCCGG TGAGATTTTG 
    AGAAAGTACG CGAGAGGCCG AGATGGTGAA TGCTGCCTTA ATCCGCCAGA 
    CAGAGGGAGC GCTTGGACTG TGTTGGGCCA TCTCCTTCTT CTCTCTCCTT 
    CTTATTGGCA CTTTCCTGNT GATTGCCTTC TTTGCACCCA GACACTGGAC 
    CCATGGCGAG GGAGGCNCAC CAGGACCNTC

AT5G66150.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family 38 protein
Computational Description
Glycosyl hydrolase family 38 protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: mannose metabolic process, carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G13980.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.1

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G66160.2

Model type
Protein coding
Short Description
receptor homology region transmembrane domain ring H2 motif protein 1
Curator Summary
Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles.
Computational Description
receptor homology region transmembrane domain ring H2 motif protein 1 (RMR1); FUNCTIONS IN: peptidase activity, zinc ion binding; INVOLVED IN: intracellular protein transport; LOCATED IN: extrinsic to vacuolar membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: Protease-associated (PA) RING/U-box zinc finger family protein (TAIR:AT1G71980.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR