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54-4731-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 134971 [Map]; Strand: c
      • AT4G00310.1 - [+] show detail - Putative membrane lipoprotein
        Distance: 0; Region: exon3 (CDS)
      • AT4G00310.2 - [+] show detail - Putative membrane lipoprotein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 54-4731-1 - 5-prime edge 
    GNNNTATGAC CGTCTTCNNN ACNACTGCTA CTAGCGCNNC NNNTACTCTT 
    TGNACTATCG GNTGTAANAC ATCTTCTCGT GGACGNAGCG CGTCTNTTNT 
    TCTNCNCCAC CGAGGCCCNA NNCCAGAGTA ATAGGAAAAC TCCGTACGGA 
    TATCTTCAGN TGCCGGAGCG GAAACTTTCT TTCCCTGAAC CACGTGGCCG 
    TCCACGTNTA GGCGCCGNNG GAATTGNTAC AACCACTTTN NCATCATCAC 
    CGGAAGTTTN GACCGGCGAA TTAGGCTCAA GAGCTTNNGA TTNCTTGTCA 
    TAGTCATCGC TCTGATNCAT TGGGTCTTCA ACTTCCGGCG ATATAGCGTA 
    CTTATCCTNC TCCGCCGCAT TGAGATTAAG CTACCAGNNC GGGCCNTNAA 
    NCACGCGGNC CCCTATANAT AAACCNGATN AAGTGTNCAN ANAGGGGAGT 
    TNTGAATAAC AACNTGAGAG ACNAGGATGT TTGTNNAATT ACCANCCCGG 
    GCCGTGACCA CGNNGNNNNT GTANNNA

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 16759225 [Map]; Strand: w
      • AT5G41870.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 54-4731-1 - 3-prime edge 
    CCTCTGGCGG AATCCAAAAT GTAACAGTTG AAAACATCAC TCTCTACAAT 
    TCTGGTATCG GCATCCACAT CAAGACAAAC ATTGGCCGAG GAGGAAGCAT 
    CCAAGGGATA ACAATCTCCG GGGTTTACCT GGAAAAAGTC CGGACCGGGA 
    TTAAAATCTC TGGCGACACC GGAGATCACC CAGATGATAA GTTCAACACA 
    TCCGCTCTTC CCATAGTAAG AGGCATAACG ATCAAGAACG TATGGGGAAT 
    CAAAGTCGAA CGTGCTGGCA TGGTTCAGGG ATTAAAAGAT TCACCTTTCA 
    CCAATCTCTG CTTCTCCAAT GTTACACTCA CCGGAACGAA AAGTTCTCCA 
    ATATGGAAAT GCTCAGATGT CGTAGGAGCC GCTGACAAGG TCAACCCCAC 
    ACCTTGCCCT GAGCTAACAG CAACCACACA ACAAGGTGGT TCCTGTGAAA 
    ACCAATCCTA ATTCTCCAAA GCTAAGAGAC TACATGTAGA TTAATGTAAG 
    TTTTATTGCC ATCTTCATAA TTAAATCACT CGAGACTTCA CTCTTGAGAC 
    AATCTATATT CTATATAGAC TACTAATATA ATCAAATTAT AGACTTAAGG 
    TTTCACAAAA CAAGAATCAT ACTCTACTGA ATTTCTTATA TAGACAAAAT 
    CATCTTCATC ATTTTTCACA TCATATGGAT AATGATATT

AT4G00310.1

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 49 Blast hits to 49 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 8; Plants - 36; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00310.2

Model type
Protein coding
Short Description
Putative membrane lipoprotein
Computational Description
EMBRYO SAC DEVELOPMENT ARREST 8 (EDA8); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G41870.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Glycoside hydrolase, family 28 (InterPro:IPR000743), Pectin lyase fold (InterPro:IPR012334), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT4G23820.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR