1. Home
  2. Mutant Lines
  3. 54-4843-1

54-4843-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 18964480 [Map]; Strand: w
      • AT5G46730.1 - [+] show detail - glycine-rich protein
        Distance: 0; Region: exon1 (CDS)
      • AT5G46730.2 - [+] show detail - glycine-rich protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 54-4843-1 - 5-prime edge 
    GTGGAGGCGG TGGAGGATCA GCTTACGGTG CTGGAGGAGA GCATGCTAGT 
    GGTTATGGAA ACGGAGCTGG TGAAGGTGGT GGCGCCGGTG CAAGTGGGTA 
    TGGAGGGGGA GCNTTATGGA GGCNGGCNGG TGGTCATGGA GGAGGAGGTG 
    GTGGAGGATC AGCAGGAGGG GCTCACGGCG GTAGTGGTTA TGGAGGCNGG 
    TGAAGGAGGA GGAGCTGGTG GTGGAGGGTC TCATGGTGGT GCCNGANGCT 
    ATNGAGGTGG NGNCGGNNNA NGAANTGNNN NA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 9166441 [Map]; Strand: c
      • AT1G26520.1 - [+] show detail - Cobalamin biosynthesis CobW-like protein
        Distance: -541; Region: promoter
      • AT1G26530.1 - [+] show detail - PIN domain-like family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 54-4843-1 - 3-prime edge 
    GCCTCCACTA CCACCACCTC CACCACCAGC ATGACCACCA GCAGCTCCAC 
    CATAACCACC ACCTCCTCCT TCTCCTGCTC CACTAGCATA ACCACCGGAG 
    GAAGCAGCTC CACCACCACC TCCACCGTGA CCACTACCGC CACCACTAGC 
    ATACCCTTCA GCACCTCCAT ATCCTCCACC AGCTCCTTCT CCACTACCGC 
    CCCCATAACC ACCACCACTC TCTCCTCCAT AACCTCCACT ACTCACTCCT 
    CCAGAACCTC CACCACCACC ATGTCCTCCA CCGCCAGAAG CTATCAGACT 
    GGGCNGAAGA NCACGCGNGT CCCAATAGTA TCATTTTTGT CGATTCTTAA 
    TAAGTTACTT TTATATTTGG TTAGGATTGC AAAAGATCCA CGATTTGAAA 
    GACTACCTTG TGTACACAAA GGGACATATG CTGATGACTG TCTTGTGGAC 
    AGAGTTACTC AGGTAATGCC TCAGCTCCGG TTTTGTTTAC CTTCGTGTCT 
    TGTTTCTCTA AGAAGATGCT CTGTTTATGC ATGTAGTCTA ATCTTCTGTT 
    TGTTTCTTTT CTCTGTAATT AATCAGCATA AATGCTTCAT AGTAGCTACT 
    TGTGATAGAG ATCTAAAGCG AAGGATTCGC AAGGTAAAGA TGTTAGTTTG 
    ATATATATGC TTTTTGAAAT CCATGGCTAG GATC

AT1G26520.1

Model type
Protein coding
Short Description
Cobalamin biosynthesis CobW-like protein
Computational Description
Cobalamin biosynthesis CobW-like protein; CONTAINS InterPro DOMAIN/s: Cobalamin (vitamin B12) biosynthesis CobW-like (InterPro:IPR003495), Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal (InterPro:IPR011629); BEST Arabidopsis thaliana protein match is: Cobalamin biosynthesis CobW-like protein (TAIR:AT1G15730.1); Has 8517 Blast hits to 8427 proteins in 1716 species: Archae - 88; Bacteria - 6047; Metazoa - 151; Fungi - 280; Plants - 232; Viruses - 0; Other Eukaryotes - 1719 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G26530.1

Model type
Protein coding
Short Description
PIN domain-like family protein
Computational Description
PIN domain-like family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF652 (InterPro:IPR006984); BEST Arabidopsis thaliana protein match is: PIN domain-like family protein (TAIR:AT2G46230.1); Has 517 Blast hits to 517 proteins in 211 species: Archae - 4; Bacteria - 0; Metazoa - 206; Fungi - 155; Plants - 64; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46730.1

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 448555 Blast hits to 73639 proteins in 3057 species: Archae - 1103; Bacteria - 116328; Metazoa - 161151; Fungi - 31669; Plants - 45641; Viruses - 5898; Other Eukaryotes - 86765 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G46730.2

Model type
Protein coding
Short Description
glycine-rich protein
Computational Description
glycine-rich protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR